Variant report

Variant	rs7048858
Chromosome Location	chr9:101024721-101024722
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100835138..100837657-chr9:101023286..101025841,2	MCF-7	breast:
2	chr9:100954115..100956214-chr9:101024702..101026397,2	MCF-7	breast:
3	chr9:101010177..101013807-chr9:101023006..101027119,4	K562	blood:
4	chr9:100966646..100969743-chr9:101023259..101026194,3	K562	blood:

Variant related genes	Relation type
ENSG00000095380	Chromatin interaction
ENSG00000106789	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10125738	0.84[EUR][1000 genomes]
rs12345664	0.84[EUR][1000 genomes]
rs16914245	1.00[EUR][1000 genomes]
rs16914425	1.00[EUR][1000 genomes]
rs2050575	0.84[EUR][1000 genomes]
rs57094433	1.00[EUR][1000 genomes]
rs57262924	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57583651	1.00[EUR][1000 genomes]
rs58106044	1.00[EUR][1000 genomes]
rs58523842	1.00[EUR][1000 genomes]
rs58811309	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59313219	1.00[EUR][1000 genomes]
rs60489972	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60522491	1.00[EUR][1000 genomes]
rs61349713	1.00[EUR][1000 genomes]
rs61752516	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7032496	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488716	1.00[EUR][1000 genomes]
rs73488726	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488743	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488748	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488767	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488773	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488774	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488777	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488779	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488785	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488791	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73490716	1.00[EUR][1000 genomes]
rs73490724	1.00[EUR][1000 genomes]
rs73490729	1.00[EUR][1000 genomes]
rs73490751	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1045780	chr9:100943318-101080389	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540180	chr9:100943318-101080389	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101019200-101024800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:101019600-101026200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:101019600-101027200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr9:101023600-101026200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:101024000-101026400	Enhancers	HSMMtube	muscle
6	chr9:101024400-101024800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:101024400-101024800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:101024400-101025800	Enhancers	K562	blood
9	chr9:101024400-101026200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:101024400-101026200	Enhancers	HSMM	muscle

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