Variant report

Variant	rs73488785
Chromosome Location	chr9:101022904-101022905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr9:101022752-101022924	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:101016141..101018439-chr9:101020507..101022977,2	MCF-7	breast:
2	chr9:101022063..101024175-chr9:101026064..101028233,2	K562	blood:
3	chr9:101016008..101018748-chr9:101020851..101024407,3	MCF-7	breast:
4	chr9:100686308..100689678-chr9:101021142..101024168,3	MCF-7	breast:

Variant related genes	Relation type
TBC1D2	TF binding region
ENSG00000095383	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10125738	0.84[EUR][1000 genomes]
rs12341228	0.83[AFR][1000 genomes]
rs12345664	0.84[EUR][1000 genomes]
rs16914245	1.00[EUR][1000 genomes]
rs16914425	1.00[EUR][1000 genomes]
rs16914443	0.94[AFR][1000 genomes]
rs2050575	0.84[EUR][1000 genomes]
rs57094433	1.00[EUR][1000 genomes]
rs57262924	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57583651	1.00[EUR][1000 genomes]
rs58106044	1.00[EUR][1000 genomes]
rs58523842	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58811309	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59313219	1.00[EUR][1000 genomes]
rs59519660	0.91[AFR][1000 genomes]
rs60489972	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60522491	1.00[EUR][1000 genomes]
rs61349713	1.00[EUR][1000 genomes]
rs61752516	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7032496	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7048858	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488716	1.00[EUR][1000 genomes]
rs73488726	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488743	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488748	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488767	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488773	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488774	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488777	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488779	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488791	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73490714	0.94[AFR][1000 genomes]
rs73490716	1.00[EUR][1000 genomes]
rs73490718	0.91[AFR][1000 genomes]
rs73490720	0.91[AFR][1000 genomes]
rs73490723	0.91[AFR][1000 genomes]
rs73490724	1.00[EUR][1000 genomes]
rs73490727	0.91[AFR][1000 genomes]
rs73490729	1.00[EUR][1000 genomes]
rs73490751	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1045780	chr9:100943318-101080389	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540180	chr9:100943318-101080389	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101019200-101024800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:101019400-101023000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr9:101019400-101024400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:101019400-101024400	Weak transcription	HSMM	muscle
5	chr9:101019600-101024000	Weak transcription	HSMMtube	muscle
6	chr9:101019600-101024400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:101019600-101026200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:101019600-101027200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr9:101020200-101024400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:101022800-101023400	Enhancers	Liver	Liver
11	chr9:101022800-101023400	Flanking Active TSS	K562	blood

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