Variant report

Variant	rs73490716
Chromosome Location	chr9:101035681-101035682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101034358..101036194-chr9:101038260..101041518,3	K562	blood:
2	chr9:101034397..101036575-chr9:101039828..101041518,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10125738	0.84[EUR][1000 genomes]
rs12345664	0.84[EUR][1000 genomes]
rs16914245	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16914425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2050575	0.84[EUR][1000 genomes]
rs57094433	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57262924	1.00[EUR][1000 genomes]
rs57583651	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58106044	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58123478	0.83[AMR][1000 genomes]
rs58523842	1.00[EUR][1000 genomes]
rs58811309	1.00[EUR][1000 genomes]
rs59313219	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60489972	1.00[EUR][1000 genomes]
rs60522491	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61201457	0.83[AFR][1000 genomes]
rs61349713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61752516	1.00[EUR][1000 genomes]
rs7032496	1.00[EUR][1000 genomes]
rs7048858	1.00[EUR][1000 genomes]
rs73488716	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488726	1.00[EUR][1000 genomes]
rs73488743	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73488748	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73488767	1.00[EUR][1000 genomes]
rs73488773	1.00[EUR][1000 genomes]
rs73488774	1.00[EUR][1000 genomes]
rs73488777	1.00[EUR][1000 genomes]
rs73488779	1.00[EUR][1000 genomes]
rs73488785	1.00[EUR][1000 genomes]
rs73488791	1.00[EUR][1000 genomes]
rs73490724	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73490728	0.83[AFR][1000 genomes]
rs73490729	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73490751	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1045780	chr9:100943318-101080389	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540180	chr9:100943318-101080389	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv519818	chr9:101024887-101092316	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101026400-101036000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr9:101028200-101037000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:101033200-101036000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:101033400-101036200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr9:101034400-101038600	Weak transcription	K562	blood
6	chr9:101034600-101037000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:101035200-101037200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr9:101035400-101036000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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