Variant report

Variant	rs73488777
Chromosome Location	chr9:101017371-101017372
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100934229..100937131-chr9:101015572..101018332,2	MCF-7	breast:
2	chr9:100818376..100820486-chr9:101016476..101019522,4	K562	blood:
3	chr9:100991095..100993951-chr9:101015784..101017449,2	MCF-7	breast:
4	chr9:100934290..100936965-chr9:101016512..101018556,3	K562	blood:
5	chr9:100744384..100747791-chr9:101014978..101019057,4	MCF-7	breast:
6	chr9:100818822..100821185-chr9:101017013..101019589,2	MCF-7	breast:
7	chr9:100683079..100687048-chr9:101015405..101020638,4	K562	blood:
8	chr9:100951866..100957184-chr9:101014234..101020511,10	K562	blood:
9	chr9:100954775..100957184-chr9:101014893..101018488,3	K562	blood:
10	chr9:100683079..100686023-chr9:101015405..101017576,2	K562	blood:
11	chr9:100683337..100688322-chr9:101015638..101019207,5	MCF-7	breast:
12	chr9:100817689..100820206-chr9:101017310..101019410,4	MCF-7	breast:
13	chr9:100973089..100975981-chr9:101016778..101019724,3	MCF-7	breast:
14	chr9:100952914..100958060-chr9:101016344..101019894,9	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000136932	Chromatin interaction
ENSG00000136938	Chromatin interaction
ENSG00000095380	Chromatin interaction
ENSG00000106789	Chromatin interaction
ENSG00000095383	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10125738	0.84[EUR][1000 genomes]
rs12345664	0.84[EUR][1000 genomes]
rs16914245	1.00[EUR][1000 genomes]
rs16914425	1.00[EUR][1000 genomes]
rs2050575	0.84[EUR][1000 genomes]
rs57094433	1.00[EUR][1000 genomes]
rs57262924	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57583651	1.00[EUR][1000 genomes]
rs58106044	1.00[EUR][1000 genomes]
rs58523842	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58811309	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59313219	1.00[EUR][1000 genomes]
rs60489972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60522491	1.00[EUR][1000 genomes]
rs61349713	1.00[EUR][1000 genomes]
rs61752516	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7032496	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7048858	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488716	1.00[EUR][1000 genomes]
rs73488726	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488743	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488748	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488773	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488774	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488779	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488785	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488791	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73490716	1.00[EUR][1000 genomes]
rs73490724	1.00[EUR][1000 genomes]
rs73490729	1.00[EUR][1000 genomes]
rs73490751	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1045780	chr9:100943318-101080389	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540180	chr9:100943318-101080389	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101014000-101017400	Flanking Active TSS	Hela-S3	cervix
2	chr9:101014800-101017400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
3	chr9:101014800-101017400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr9:101015200-101019000	Active TSS	HSMMtube	muscle
5	chr9:101015400-101017400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:101015600-101019400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr9:101016000-101017400	Flanking Active TSS	Fetal Intestine Large	intestine
8	chr9:101016000-101017800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:101016000-101019400	Active TSS	H9 Cell Line	embryonic stem cell
10	chr9:101016200-101017400	Flanking Active TSS	NHDF-Ad	bronchial
11	chr9:101016200-101017600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
12	chr9:101016200-101019000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr9:101016400-101017400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:101016400-101017600	Flanking Active TSS	K562	blood
15	chr9:101016400-101019000	Active TSS	Esophagus	oesophagus
16	chr9:101016400-101019000	Active TSS	HMEC	breast
17	chr9:101016400-101019000	Active TSS	NHEK	skin
18	chr9:101016600-101017400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
19	chr9:101016600-101017400	Flanking Active TSS	Brain Substantia Nigra	brain
20	chr9:101016600-101017400	Flanking Active TSS	Colonic Mucosa	Colon
21	chr9:101016600-101017600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
22	chr9:101016600-101017600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr9:101016600-101017600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr9:101016600-101017600	Flanking Active TSS	Duodenum Mucosa	Duodenum
25	chr9:101016600-101017600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr9:101016600-101017600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
27	chr9:101016600-101017600	Flanking Active TSS	NH-A	brain
28	chr9:101016600-101017800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
29	chr9:101016600-101018000	Flanking Active TSS	Primary B cells from cord blood	blood
30	chr9:101016600-101019000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr9:101016600-101019200	Active TSS	HSMM	muscle
32	chr9:101016600-101019600	Active TSS	iPS-15b Cell Line	embryonic stem cell
33	chr9:101016800-101017400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
34	chr9:101016800-101017400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
35	chr9:101016800-101017400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr9:101016800-101017400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr9:101016800-101017400	Flanking Active TSS	Fetal Intestine Small	intestine
38	chr9:101016800-101017400	Flanking Active TSS	Placenta	Placenta
39	chr9:101016800-101017400	Flanking Active TSS	Rectal Smooth Muscle	rectum
40	chr9:101016800-101017400	Flanking Bivalent TSS/Enh	Thymus	Thymus
41	chr9:101016800-101017600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
42	chr9:101016800-101017600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
43	chr9:101016800-101017600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
44	chr9:101016800-101017600	Flanking Active TSS	Brain Angular Gyrus	brain
45	chr9:101016800-101017600	Flanking Active TSS	Brain Cingulate Gyrus	brain
46	chr9:101016800-101017600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
47	chr9:101016800-101017600	Flanking Active TSS	Colon Smooth Muscle	Colon
48	chr9:101016800-101017600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
49	chr9:101016800-101017600	Flanking Bivalent TSS/Enh	Dnd41	blood
50	chr9:101016800-101017600	Flanking Active TSS	HUVEC	blood vessel

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