Variant report

Variant	rs706559
Chromosome Location	chr7:137274118-137274119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137268781..137270791-chr7:137274029..137275875,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1627366	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs1723097	0.80[AFR][1000 genomes]
rs1728454	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs706563	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs706566	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs706569	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs834064	1.00[YRI][hapmap]
rs834065	1.00[YRI][hapmap]
rs834096	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs834434	0.80[AFR][1000 genomes]
rs834440	0.80[AFR][1000 genomes]
rs866751	1.00[YRI][hapmap];0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137215400-137275400	Weak transcription	Brain Angular Gyrus	brain
2	chr7:137224400-137274800	Weak transcription	HSMMtube	muscle
3	chr7:137237400-137277800	Weak transcription	Aorta	Aorta
4	chr7:137255000-137274800	Weak transcription	Brain Anterior Caudate	brain
5	chr7:137260400-137274200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:137264800-137274800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:137264800-137275600	Weak transcription	Fetal Brain Male	brain
8	chr7:137265000-137274800	Weak transcription	Brain Hippocampus Middle	brain
9	chr7:137265000-137274800	Weak transcription	Brain Substantia Nigra	brain
10	chr7:137265000-137275000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr7:137265400-137274400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr7:137265400-137276000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:137265600-137274400	Weak transcription	NH-A	brain
14	chr7:137265600-137276000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:137265800-137276200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr7:137266600-137274400	Weak transcription	HSMM	muscle
17	chr7:137266800-137276000	Weak transcription	Osteobl	bone
18	chr7:137268800-137274800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:137269000-137274200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr7:137270200-137274400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:137270200-137291400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr7:137270800-137274400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:137271000-137275000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr7:137271400-137275800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr7:137271400-137286600	Weak transcription	Brain Germinal Matrix	brain
26	chr7:137272000-137274200	Weak transcription	Fetal Stomach	stomach
27	chr7:137272800-137274400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr7:137273600-137275800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr7:137273800-137275000	Enhancers	Colon Smooth Muscle	Colon
30	chr7:137274000-137277000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr7:137274000-137277200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr7:137274000-137277800	Enhancers	Fetal Heart	heart

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