Variant report

Variant	rs834096
Chromosome Location	chr7:137264083-137264084
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137256136..137257936-chr7:137262366..137264782,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1627366	1.00[YRI][hapmap]
rs1728454	1.00[YRI][hapmap]
rs706559	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs706563	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs706566	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs706569	0.90[LWK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs834064	1.00[YRI][hapmap]
rs834065	1.00[YRI][hapmap]
rs866751	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137215400-137275400	Weak transcription	Brain Angular Gyrus	brain
2	chr7:137224400-137274800	Weak transcription	HSMMtube	muscle
3	chr7:137237400-137277800	Weak transcription	Aorta	Aorta
4	chr7:137249800-137265000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:137251000-137264600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr7:137255000-137274800	Weak transcription	Brain Anterior Caudate	brain
7	chr7:137257400-137264400	Weak transcription	NHDF-Ad	bronchial
8	chr7:137257600-137264400	Weak transcription	Fetal Heart	heart
9	chr7:137259600-137264200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:137260400-137274200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:137261000-137264400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:137261800-137264800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:137262000-137264400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:137262000-137265200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr7:137262400-137264400	Weak transcription	NHLF	lung
16	chr7:137262800-137264400	Weak transcription	HSMM	muscle
17	chr7:137263200-137264400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:137263200-137265000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr7:137263200-137265800	Enhancers	HUVEC	blood vessel
20	chr7:137263400-137264400	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr7:137263400-137264400	Weak transcription	Osteobl	bone
22	chr7:137263400-137265000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr7:137263400-137266400	Weak transcription	Fetal Stomach	stomach
24	chr7:137263600-137264200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr7:137263600-137273600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr7:137263800-137265000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr7:137264000-137264400	Enhancers	Muscle Satellite Cultured Cells	--
28	chr7:137264000-137265600	Enhancers	NH-A	brain
29	chr7:137264000-137265800	Enhancers	HMEC	breast
30	chr7:137264000-137269400	Weak transcription	Brain Germinal Matrix	brain

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