Variant report

Variant	rs706563
Chromosome Location	chr7:137277532-137277533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:135485497..135486705-chr7:137276035..137277662,8	K562	blood:
2	chr7:135799438..135800434-chr7:137276795..137277542,2	MCF-7	breast:
3	chr7:136853682..136854530-chr7:137276883..137277639,5	MCF-7	breast:
4	chr7:136853692..136854573-chr7:137276894..137277671,4	MCF-7	breast:
5	chr7:136372346..136372966-chr7:137276780..137277565,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1627366	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs1723097	0.80[AFR][1000 genomes]
rs1728454	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs706559	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs706566	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs706569	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs834064	1.00[YRI][hapmap]
rs834065	1.00[YRI][hapmap]
rs834096	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs834434	0.80[AFR][1000 genomes]
rs834440	0.80[AFR][1000 genomes]
rs866751	1.00[YRI][hapmap];0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137237400-137277800	Weak transcription	Aorta	Aorta
2	chr7:137270200-137291400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:137271400-137286600	Weak transcription	Brain Germinal Matrix	brain
4	chr7:137274000-137277800	Enhancers	Fetal Heart	heart
5	chr7:137274200-137277600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:137274400-137277600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:137274400-137277800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr7:137275600-137278200	Enhancers	Fetal Brain Male	brain
9	chr7:137275800-137277600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:137275800-137277800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:137276000-137277800	Enhancers	Brain Cingulate Gyrus	brain
12	chr7:137276200-137277600	Enhancers	Colon Smooth Muscle	Colon
13	chr7:137276200-137278000	Enhancers	Fetal Brain Female	brain
14	chr7:137276400-137277600	Enhancers	NH-A	brain
15	chr7:137276600-137277600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:137277000-137282400	Weak transcription	HSMMtube	muscle
17	chr7:137277000-137287400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr7:137277000-137287600	Weak transcription	Brain Hippocampus Middle	brain
19	chr7:137277200-137296200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr7:137277200-137326800	Weak transcription	Osteobl	bone
21	chr7:137277400-137282400	Weak transcription	HSMM	muscle
22	chr7:137277400-137283800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr7:137277400-137287600	Weak transcription	Brain Anterior Caudate	brain
24	chr7:137277400-137312000	Weak transcription	Brain Angular Gyrus	brain

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