Variant report

Variant	rs706569
Chromosome Location	chr7:137286850-137286851
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1627366	1.00[YRI][hapmap]
rs1646366	0.81[LWK][hapmap]
rs1728454	1.00[YRI][hapmap]
rs706559	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs706563	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs706566	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs834064	1.00[YRI][hapmap]
rs834065	1.00[YRI][hapmap]
rs834073	0.81[LWK][hapmap]
rs834096	0.90[LWK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs834097	0.87[MKK][hapmap]
rs866751	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	esv1812888	chr7:137283212-137366467	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137270200-137291400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:137277000-137287400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:137277000-137287600	Weak transcription	Brain Hippocampus Middle	brain
4	chr7:137277200-137296200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:137277200-137326800	Weak transcription	Osteobl	bone
6	chr7:137277400-137287600	Weak transcription	Brain Anterior Caudate	brain
7	chr7:137277400-137312000	Weak transcription	Brain Angular Gyrus	brain
8	chr7:137277600-137315400	Weak transcription	NH-A	brain
9	chr7:137277800-137287600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr7:137277800-137292000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:137278400-137304200	Weak transcription	Aorta	Aorta
12	chr7:137282800-137337400	Weak transcription	HSMMtube	muscle
13	chr7:137283400-137302600	Weak transcription	HSMM	muscle
14	chr7:137284600-137292200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr7:137286800-137290400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:137286800-137292200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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