Variant report
| Variant | rs7071770 |
|---|---|
| Chromosome Location | chr10:26096852-26096853 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10828875 | 0.81[ASN][1000 genomes] |
| rs11014761 | 0.81[ASN][1000 genomes] |
| rs11014762 | 0.81[CEU][hapmap];0.83[MEX][hapmap] |
| rs17744957 | 0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2437401 | 0.93[ASN][1000 genomes] |
| rs2437413 | 0.81[ASN][1000 genomes] |
| rs2437414 | 0.86[ASN][1000 genomes] |
| rs2437415 | 0.83[ASN][1000 genomes] |
| rs2437416 | 0.99[ASN][1000 genomes] |
| rs2437419 | 0.98[ASN][1000 genomes] |
| rs2505439 | 0.92[ASN][1000 genomes] |
| rs2505492 | 0.99[ASN][1000 genomes] |
| rs2917191 | 0.97[ASN][1000 genomes] |
| rs4747544 | 0.84[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4749075 | 0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7067925 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7075716 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7094275 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7098327 | 0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs751006 | 0.81[CEU][hapmap] |
| rs751007 | 0.81[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv894974 | chr10:26028530-26322783 | Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1051756 | chr10:26092320-26277478 | Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:26088200-26106600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
