Variant report

Variant	rs7094610
Chromosome Location	chr10:50122181-50122182
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10776652	0.90[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11101558	0.90[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11595341	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1913517	0.84[CHB][hapmap];0.91[CHD][hapmap];0.84[ASN][1000 genomes]
rs2377652	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2377653	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2377654	0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2663038	0.83[CHD][hapmap]
rs2663041	0.82[CHD][hapmap]
rs2671694	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs3860191	0.81[CEU][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];0.84[TSI][hapmap];0.85[ASN][1000 genomes]
rs4838657	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6537583	0.84[ASN][1000 genomes]
rs7086101	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7086333	0.90[CEU][hapmap];0.84[CHB][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7913620	0.82[ASW][hapmap];0.90[CEU][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7923621	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv517287	chr10:50122181-50134266	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7094610	SLC18A3	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50072800-50126200	Strong transcription	Primary B cells from peripheral blood	blood
2	chr10:50074600-50129600	Strong transcription	Primary B cells from cord blood	blood
3	chr10:50075400-50126000	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:50101600-50122800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:50108400-50126000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr10:50109000-50126000	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr10:50109400-50127800	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr10:50114200-50122800	Weak transcription	Lung	lung
9	chr10:50118200-50124800	Strong transcription	GM12878-XiMat	blood
10	chr10:50118800-50123600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:50120200-50122400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:50120400-50124800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:50121000-50123200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr10:50121000-50134800	Weak transcription	Spleen	Spleen
15	chr10:50121000-50155800	Weak transcription	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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