Variant report

Variant	rs2671694
Chromosome Location	chr10:50116075-50116076
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10745284	0.82[CEU][hapmap];0.93[JPT][hapmap]
rs10776652	0.86[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs10857650	0.93[JPT][hapmap]
rs11101517	0.93[JPT][hapmap]
rs11101533	0.93[JPT][hapmap]
rs11101558	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11595341	0.97[ASN][1000 genomes]
rs17836494	0.93[JPT][hapmap]
rs1904595	0.93[JPT][hapmap]
rs1904596	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs1904604	0.82[CEU][hapmap];0.93[JPT][hapmap]
rs1913517	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1993985	0.93[JPT][hapmap]
rs2127592	0.82[CEU][hapmap];0.93[JPT][hapmap]
rs2170133	0.93[JPT][hapmap]
rs2377652	0.86[ASN][1000 genomes]
rs2377653	0.94[ASN][1000 genomes]
rs2377654	0.86[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs2620878	0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs2620880	0.93[JPT][hapmap]
rs2620881	0.93[JPT][hapmap]
rs2620882	0.84[CEU][hapmap];0.93[JPT][hapmap]
rs2620883	0.82[CEU][hapmap];0.93[JPT][hapmap]
rs2620887	0.93[JPT][hapmap]
rs2620890	0.93[JPT][hapmap]
rs2620893	0.93[JPT][hapmap]
rs2620894	0.93[JPT][hapmap]
rs2620907	0.81[CEU][hapmap];0.93[JPT][hapmap]
rs2663019	0.93[JPT][hapmap]
rs2663020	0.87[JPT][hapmap]
rs2663021	0.93[JPT][hapmap]
rs2663029	0.93[JPT][hapmap]
rs2663030	0.93[JPT][hapmap]
rs2663038	0.90[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs2663041	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2663049	0.93[JPT][hapmap]
rs2663052	0.81[CEU][hapmap];0.93[JPT][hapmap]
rs2663054	0.90[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs2663055	0.87[EUR][1000 genomes]
rs2671692	0.84[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs2671695	0.86[EUR][1000 genomes]
rs2671710	0.82[ASN][1000 genomes]
rs2671711	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs2671712	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs2940710	0.83[EUR][1000 genomes]
rs2940712	0.93[JPT][hapmap]
rs2940730	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2943244	0.85[EUR][1000 genomes]
rs2943245	1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2943255	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs3747878	0.93[JPT][hapmap]
rs3860191	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4838657	0.94[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs6537583	0.98[ASN][1000 genomes]
rs7068839	0.90[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs7069142	0.92[ASN][1000 genomes]
rs7078312	0.93[JPT][hapmap]
rs7086101	0.98[ASN][1000 genomes]
rs7086333	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7088194	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs7094610	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs7094742	0.93[JPT][hapmap]
rs7098906	0.93[JPT][hapmap]
rs7900483	0.85[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs7912174	0.93[JPT][hapmap]
rs7913620	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7915025	0.93[JPT][hapmap]
rs7922169	0.93[JPT][hapmap]
rs7923621	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50072800-50126200	Strong transcription	Primary B cells from peripheral blood	blood
2	chr10:50074600-50129600	Strong transcription	Primary B cells from cord blood	blood
3	chr10:50075400-50126000	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:50101600-50122800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:50104800-50119200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:50108400-50126000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr10:50109000-50126000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr10:50109400-50127800	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr10:50110200-50120400	Weak transcription	Primary T cells from cord blood	blood
10	chr10:50111800-50116600	Strong transcription	Primary hematopoietic stem cells	blood
11	chr10:50113400-50118200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:50113600-50118200	Weak transcription	Spleen	Spleen
13	chr10:50113600-50118400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:50114000-50120200	Weak transcription	Fetal Stomach	stomach
15	chr10:50114200-50122800	Weak transcription	Lung	lung
16	chr10:50114800-50117000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr10:50114800-50117600	Weak transcription	Esophagus	oesophagus
18	chr10:50115600-50116400	Genic enhancers	GM12878-XiMat	blood
19	chr10:50115800-50116200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:50115800-50116400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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