Variant report

Variant	rs7923621
Chromosome Location	chr10:50121215-50121216
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50118503..50121981-chr10:50130452..50133812,3	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10776651	0.81[ASN][1000 genomes]
rs10776652	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11101533	0.81[ASN][1000 genomes]
rs11101558	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11595341	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904595	0.81[ASN][1000 genomes]
rs1904600	0.81[ASN][1000 genomes]
rs1913517	0.98[ASN][1000 genomes]
rs1993985	0.81[ASN][1000 genomes]
rs2127586	0.81[ASN][1000 genomes]
rs2170133	0.81[ASN][1000 genomes]
rs2377652	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2377653	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2377654	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2620878	0.82[ASN][1000 genomes]
rs2620887	0.81[ASN][1000 genomes]
rs2620890	0.81[ASN][1000 genomes]
rs2663019	0.81[ASN][1000 genomes]
rs2663020	0.81[ASN][1000 genomes]
rs2663021	0.81[ASN][1000 genomes]
rs2663029	0.81[ASN][1000 genomes]
rs2663030	0.81[ASN][1000 genomes]
rs2663033	0.81[ASN][1000 genomes]
rs2663038	0.88[ASN][1000 genomes]
rs2663041	0.88[ASN][1000 genomes]
rs2663050	0.81[ASN][1000 genomes]
rs2663054	0.88[ASN][1000 genomes]
rs2671692	0.83[ASN][1000 genomes]
rs2671694	0.97[ASN][1000 genomes]
rs2671710	0.83[ASN][1000 genomes]
rs2671711	0.83[ASN][1000 genomes]
rs2671712	0.83[ASN][1000 genomes]
rs2889699	0.81[ASN][1000 genomes]
rs2940712	0.81[ASN][1000 genomes]
rs2940729	0.81[ASN][1000 genomes]
rs2940730	0.82[ASN][1000 genomes]
rs2943245	0.88[ASN][1000 genomes]
rs2943255	0.83[ASN][1000 genomes]
rs3860191	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4838657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6537583	0.98[ASN][1000 genomes]
rs7068839	0.89[ASN][1000 genomes]
rs7069142	0.89[ASN][1000 genomes]
rs7086101	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7086333	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7088194	0.83[ASN][1000 genomes]
rs7094610	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7094742	0.81[ASN][1000 genomes]
rs7900483	0.87[ASN][1000 genomes]
rs7913620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915025	0.81[ASN][1000 genomes]
rs7916558	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50072800-50126200	Strong transcription	Primary B cells from peripheral blood	blood
2	chr10:50074600-50129600	Strong transcription	Primary B cells from cord blood	blood
3	chr10:50075400-50126000	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:50101600-50122800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:50108400-50126000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr10:50109000-50126000	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr10:50109400-50127800	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr10:50114200-50122800	Weak transcription	Lung	lung
9	chr10:50116200-50121400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:50118200-50124800	Strong transcription	GM12878-XiMat	blood
11	chr10:50118800-50123600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:50120200-50122400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:50120400-50124800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:50121000-50123200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr10:50121000-50134800	Weak transcription	Spleen	Spleen
16	chr10:50121000-50155800	Weak transcription	Primary T cells from cord blood	blood

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