Variant report

Variant	rs2663050
Chromosome Location	chr10:50070325-50070326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10745284	0.98[ASN][1000 genomes]
rs10776650	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10776651	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10776652	0.87[ASN][1000 genomes]
rs10857650	0.91[ASN][1000 genomes]
rs10857651	0.92[ASN][1000 genomes]
rs11101517	0.92[ASN][1000 genomes]
rs11101533	1.00[ASN][1000 genomes]
rs11595341	0.81[ASN][1000 genomes]
rs17836494	0.99[ASN][1000 genomes]
rs1904595	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904600	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904604	0.97[ASN][1000 genomes]
rs1904605	0.98[ASN][1000 genomes]
rs1993985	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2127586	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2127592	0.98[ASN][1000 genomes]
rs2170133	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2377653	0.84[ASN][1000 genomes]
rs2377654	0.84[ASN][1000 genomes]
rs2620878	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2620880	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2620881	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2620882	0.98[ASN][1000 genomes]
rs2620883	0.98[ASN][1000 genomes]
rs2620884	0.98[ASN][1000 genomes]
rs2620885	0.98[ASN][1000 genomes]
rs2620887	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2620890	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2620893	0.99[ASN][1000 genomes]
rs2620894	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2620907	0.98[ASN][1000 genomes]
rs2663019	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2663020	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2663021	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2663029	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2663030	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2663033	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2663034	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2663038	0.89[ASN][1000 genomes]
rs2663041	0.87[ASN][1000 genomes]
rs2663049	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2663052	0.99[ASN][1000 genomes]
rs2663054	0.89[ASN][1000 genomes]
rs2663069	0.98[ASN][1000 genomes]
rs2671692	0.92[ASN][1000 genomes]
rs2671710	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2671711	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2671712	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2889699	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2928404	0.98[ASN][1000 genomes]
rs2940712	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2940728	0.99[ASN][1000 genomes]
rs2940729	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2940730	0.95[ASN][1000 genomes]
rs2943245	0.89[ASN][1000 genomes]
rs2943255	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3747878	0.92[ASN][1000 genomes]
rs3827683	0.92[ASN][1000 genomes]
rs4838657	0.81[ASN][1000 genomes]
rs6537581	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6537582	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7068839	0.87[ASN][1000 genomes]
rs7069142	0.87[ASN][1000 genomes]
rs7074067	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7078312	0.94[ASN][1000 genomes]
rs7086101	0.81[ASN][1000 genomes]
rs7086333	0.81[ASN][1000 genomes]
rs7088194	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7094742	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7098906	0.91[ASN][1000 genomes]
rs7900483	0.91[ASN][1000 genomes]
rs7912174	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7913620	0.81[ASN][1000 genomes]
rs7915025	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916558	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7922169	0.94[ASN][1000 genomes]
rs7923621	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50054400-50081600	Weak transcription	Spleen	Spleen
2	chr10:50060200-50075600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:50060600-50075400	Weak transcription	Primary T cells from cord blood	blood
4	chr10:50065000-50075400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr10:50068000-50071200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:50068600-50075200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:50069400-50070800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr10:50069600-50071000	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr10:50069800-50074400	Weak transcription	GM12878-XiMat	blood
10	chr10:50070000-50070600	Weak transcription	Primary B cells from cord blood	blood
11	chr10:50070000-50074600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr10:50070200-50072800	Weak transcription	Primary B cells from peripheral blood	blood

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