Variant report

Variant	rs2620893
Chromosome Location	chr10:50067107-50067108
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50053365..50055551-chr10:50066572..50068998,2	K562	blood:
2	chr10:50053365..50056074-chr10:50065174..50068072,2	K562	blood:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10745284	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10776650	0.81[JPT][hapmap];0.94[ASN][1000 genomes]
rs10776651	0.99[ASN][1000 genomes]
rs10776652	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10857650	0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10857651	0.91[ASN][1000 genomes]
rs11101517	0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11101533	0.91[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11101558	0.93[JPT][hapmap]
rs17836494	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1904595	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1904600	0.99[ASN][1000 genomes]
rs1904604	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1904605	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1913517	0.93[JPT][hapmap]
rs1993985	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2127586	0.99[ASN][1000 genomes]
rs2127592	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2170133	0.91[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2250389	0.81[EUR][1000 genomes]
rs2377653	0.84[ASN][1000 genomes]
rs2377654	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2448545	0.84[EUR][1000 genomes]
rs2620878	0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2620880	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2620881	0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2620882	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2620883	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2620884	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2620885	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2620887	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2620890	0.91[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2620891	0.83[EUR][1000 genomes]
rs2620894	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2620898	0.84[EUR][1000 genomes]
rs2620904	0.84[EUR][1000 genomes]
rs2620907	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2663019	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2663020	0.90[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs2663021	0.91[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2663029	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2663030	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2663033	0.99[ASN][1000 genomes]
rs2663034	0.98[ASN][1000 genomes]
rs2663038	0.80[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2663041	0.84[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2663049	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2663050	0.99[ASN][1000 genomes]
rs2663051	0.84[EUR][1000 genomes]
rs2663052	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2663054	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2663069	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2671692	0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2671694	0.93[JPT][hapmap]
rs2671710	0.96[ASN][1000 genomes]
rs2671711	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2671712	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2889699	0.99[ASN][1000 genomes]
rs2928404	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2940712	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2940727	0.86[EUR][1000 genomes]
rs2940728	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2940729	0.99[ASN][1000 genomes]
rs2940730	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2943245	0.84[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2943255	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3747878	0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3827683	0.91[ASN][1000 genomes]
rs3860191	0.93[JPT][hapmap]
rs4838657	0.93[JPT][hapmap]
rs6537581	0.94[ASN][1000 genomes]
rs6537582	0.94[ASN][1000 genomes]
rs7068839	0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7069142	0.87[ASN][1000 genomes]
rs7074067	0.82[ASN][1000 genomes]
rs7078312	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7086333	0.93[JPT][hapmap]
rs7088194	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7094742	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7097397	0.83[JPT][hapmap]
rs7098906	0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7900483	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7912174	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7913620	0.93[JPT][hapmap]
rs7915025	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7916558	0.99[ASN][1000 genomes]
rs7922169	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50028600-50070200	Strong transcription	Primary B cells from peripheral blood	blood
2	chr10:50054400-50081600	Weak transcription	Spleen	Spleen
3	chr10:50060200-50075600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr10:50060600-50075400	Weak transcription	Primary T cells from cord blood	blood
5	chr10:50061200-50068400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr10:50062000-50068000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:50062200-50068400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:50062800-50068000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr10:50063000-50069200	Weak transcription	GM12878-XiMat	blood
10	chr10:50064600-50069200	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr10:50064600-50070000	Strong transcription	Primary B cells from cord blood	blood
12	chr10:50065000-50075400	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr10:50066000-50069400	Strong transcription	Primary monocytes fromperipheralblood	blood

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