Variant report

Variant	rs7095551
Chromosome Location	chr10:99534780-99534781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11189365	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11189370	0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11189371	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12269197	0.89[EUR][1000 genomes]
rs13377035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1544178	0.89[EUR][1000 genomes]
rs1934562	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2185365	0.85[CHB][hapmap];1.00[MEX][hapmap]
rs3750613	1.00[JPT][hapmap]
rs7097247	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73324700	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs946783	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv467441	chr10:99472710-99541104	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv552026	chr10:99472710-99541104	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99532000-99540200	Weak transcription	Right Atrium	heart
2	chr10:99532800-99541000	Weak transcription	Gastric	stomach
3	chr10:99533200-99534800	Enhancers	Pancreas	Pancrea
4	chr10:99533600-99538200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:99533600-99541400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:99533800-99538200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:99534400-99535200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr10:99534400-99535200	Enhancers	Duodenum Mucosa	Duodenum
9	chr10:99534400-99535200	Flanking Active TSS	HepG2	liver
10	chr10:99534400-99535600	Enhancers	Fetal Intestine Small	intestine
11	chr10:99534600-99534800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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