Variant report

Variant	rs73324700
Chromosome Location	chr10:99532660-99532661
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:99532636-99532686	Caco-2	colon:	n/a
2	chr10:99532636-99532686	Jurkat	blood:	n/a
3	chr10:99532636-99532686	AG04450	lung:	fetal
4	chr10:99532636-99532686	GM06990	blood:	n/a
5	chr10:99532636-99532686	PANC-1	pancreas:	n/a
6	chr10:99532636-99532686	GM12892	blood:	n/a
7	chr10:99532636-99532686	MCF-7	breast:	n/a
8	chr10:99532636-99532686	BJ	skin:	n/a
9	chr10:99532636-99532686	ProgFib	skin:	n/a
10	chr10:99532636-99532686	GM12878	blood:	n/a
11	chr10:99532636-99532686	SAEC	small airway:	n/a
12	chr10:99532636-99532686	HCM	heart:	n/a
13	chr10:99532636-99532686	K562	blood:	n/a
14	chr10:99532636-99532686	BE2_C	brain:	n/a
15	chr10:99532636-99532686	NH-A	brain:	n/a
16	chr10:99532636-99532686	NHBE	bronchial:	n/a
17	chr10:99532636-99532686	LNCaP	prostate:	n/a
18	chr10:99532636-99532686	HepG2	liver:	n/a
19	chr10:99532636-99532686	HAEpiC	amniotic membrane:	n/a
20	chr10:99532636-99532686	AoSMC	blood vessel:	n/a
21	chr10:99532636-99532686	MCF10A-Er-Src	breast:	n/a
22	chr10:99532636-99532686	CMK	blood:	n/a
23	chr10:99532636-99532686	HEK293	kidney:	embryo
24	chr10:99532636-99532686	ECC-1	luminal epithelium:	n/a
25	chr10:99532636-99532686	T-47D	breast:	n/a
26	chr10:99532636-99532686	Hepatocyte	liver:	n/a
27	chr10:99532636-99532686	AG04449	skin:	fetal
28	chr10:99532636-99532686	ovcar-3	ovarian:	n/a
29	chr10:99532636-99532686	HEEpiC	esophagus:	n/a
30	chr10:99532636-99532686	SK-N-SH_RA	brain:	n/a
31	chr10:99532636-99532686	A549	lung:	n/a
32	chr10:99532636-99532686	IMR90	lung:	fetal
33	chr10:99532636-99532686	HCF	heart:	n/a
34	chr10:99532636-99532686	HIPEpiC	eye:	n/a
35	chr10:99532636-99532686	HRPEpiC	eye:	n/a
36	chr10:99532636-99532686	SK-N-SH	brain:	n/a
37	chr10:99532636-99532686	HCPEpiC	choroid plexus:	n/a
38	chr10:99532636-99532686	HNPCEpiC	eye:	n/a
39	chr10:99532636-99532686	NHDF-neo	bronchial:	n/a
40	chr10:99532636-99532686	U87	brain:	n/a
41	chr10:99532636-99532686	NB4	blood:	n/a
42	chr10:99532636-99532686	AG09319	gingival:	n/a
43	chr10:99532636-99532686	HUVEC	blood vessel:	n/a
44	chr10:99532636-99532686	HRCEpiC	kidney:	n/a
45	chr10:99532636-99532686	H1-hESC	embryonic stem cell:	embryo
46	chr10:99532636-99532686	GM19239	blood:	n/a
47	chr10:99532636-99532686	HPAEpiC	pulmonary alveolar:	n/a
48	chr10:99532636-99532686	HMEC	breast:	n/a
49	chr10:99532636-99532686	AG09309	skin:	n/a
50	chr10:99532636-99532686	SKMC	muscle:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99532050..99535019-chr10:99556525..99559410,2	K562	blood:

No data

Variant related genes	Relation type
SFRP5	CpG island

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11189364	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11189365	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11189370	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11189371	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249138	0.85[ASN][1000 genomes]
rs12264638	0.85[ASN][1000 genomes]
rs12266257	0.85[ASN][1000 genomes]
rs12269197	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13377035	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1544178	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108378	0.92[ASN][1000 genomes]
rs1934562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2185365	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28549815	0.85[ASN][1000 genomes]
rs3750613	0.96[ASN][1000 genomes]
rs4378321	0.81[ASN][1000 genomes]
rs58554424	0.92[ASN][1000 genomes]
rs6584151	0.81[ASN][1000 genomes]
rs6584152	0.85[ASN][1000 genomes]
rs7095551	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7097247	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73324634	0.81[ASN][1000 genomes]
rs73324671	0.88[ASN][1000 genomes]
rs73326541	0.92[ASN][1000 genomes]
rs946783	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv467441	chr10:99472710-99541104	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv552026	chr10:99472710-99541104	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv3340017	chr10:99530387-99533135	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv3390726	chr10:99530862-99532860	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99531800-99532800	Enhancers	Gastric	stomach
2	chr10:99531800-99533400	Bivalent Enhancer	Fetal Thymus	thymus
3	chr10:99532000-99532800	Bivalent Enhancer	Stomach Mucosa	stomach
4	chr10:99532000-99533600	Bivalent Enhancer	Fetal Heart	heart
5	chr10:99532000-99533600	Bivalent Enhancer	Fetal Intestine Large	intestine
6	chr10:99532000-99540200	Weak transcription	Right Atrium	heart
7	chr10:99532200-99533200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
8	chr10:99532200-99533600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:99532400-99532800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
10	chr10:99532400-99533000	Enhancers	K562	blood
11	chr10:99532400-99533600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:99532400-99533600	Bivalent Enhancer	Fetal Intestine Small	intestine
13	chr10:99532600-99532800	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
14	chr10:99532600-99533000	Enhancers	Pancreas	Pancrea
15	chr10:99532600-99533000	Bivalent Enhancer	HepG2	liver
16	chr10:99532600-99533600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell

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