Variant report

Variant	rs17108378
Chromosome Location	chr10:99502897-99502898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99496561..99499053-chr10:99501574..99505641,4	MCF-7	breast:
2	chr10:99424940..99426723-chr10:99501991..99504090,2	K562	blood:
3	chr10:99500710..99504055-chr10:99516731..99520441,4	K562	blood:
4	chr10:99445609..99447158-chr10:99500562..99503071,2	MCF-7	breast:
5	chr10:99494917..99500697-chr10:99501380..99508176,12	K562	blood:
6	chr10:99499187..99502135-chr10:99502777..99505222,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119986	Chromatin interaction
ENSG00000155256	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11189364	0.92[ASN][1000 genomes]
rs11189365	0.85[CHB][hapmap];0.92[ASN][1000 genomes]
rs11189370	0.86[CHB][hapmap];0.92[ASN][1000 genomes]
rs11189371	0.86[CHB][hapmap];0.92[ASN][1000 genomes]
rs12249138	0.85[ASN][1000 genomes]
rs12264638	0.85[ASN][1000 genomes]
rs12266257	0.85[ASN][1000 genomes]
rs12269197	0.92[ASN][1000 genomes]
rs13377035	0.92[ASN][1000 genomes]
rs1544178	0.92[ASN][1000 genomes]
rs1934562	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs2185365	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs28549815	0.85[ASN][1000 genomes]
rs3750613	0.82[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4378321	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58554424	0.92[ASN][1000 genomes]
rs6584151	0.81[ASN][1000 genomes]
rs6584152	0.85[ASN][1000 genomes]
rs7097247	0.92[ASN][1000 genomes]
rs73324634	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73324671	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73324700	0.92[ASN][1000 genomes]
rs73326541	0.92[ASN][1000 genomes]
rs946783	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv467441	chr10:99472710-99541104	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv552026	chr10:99472710-99541104	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99497600-99522600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:99498000-99507800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:99498200-99503600	Strong transcription	Fetal Lung	lung
4	chr10:99498200-99507000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:99498200-99509000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr10:99498200-99520600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:99498400-99504000	Weak transcription	Small Intestine	intestine
8	chr10:99498400-99514800	Strong transcription	Fetal Stomach	stomach
9	chr10:99498400-99517600	Strong transcription	H1 Cell Line	embryonic stem cell
10	chr10:99498400-99519000	Strong transcription	Fetal Intestine Large	intestine
11	chr10:99498400-99519200	Strong transcription	Fetal Muscle Trunk	muscle
12	chr10:99498600-99504400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr10:99498600-99514800	Strong transcription	Fetal Muscle Leg	muscle
14	chr10:99498600-99517800	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr10:99498600-99518000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:99498600-99518000	Strong transcription	Fetal Thymus	thymus
17	chr10:99498600-99520200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:99498600-99520600	Strong transcription	Osteobl	bone
19	chr10:99498600-99522200	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr10:99498600-99522400	Strong transcription	Duodenum Mucosa	Duodenum
21	chr10:99498600-99522400	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr10:99498600-99523000	Strong transcription	Thymus	Thymus
23	chr10:99498600-99523600	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr10:99498600-99524800	Weak transcription	Fetal Brain Male	brain
25	chr10:99498800-99506000	Strong transcription	Sigmoid Colon	Sigmoid Colon
26	chr10:99498800-99522400	Strong transcription	Dnd41	blood
27	chr10:99499000-99509600	Weak transcription	Psoas Muscle	Psoas
28	chr10:99499000-99517800	Strong transcription	Skeletal Muscle Female	skeletal muscle
29	chr10:99499000-99518000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:99499200-99505800	Strong transcription	HUVEC	blood vessel
31	chr10:99499200-99517000	Strong transcription	HSMM	muscle
32	chr10:99499200-99518000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:99499200-99522800	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr10:99499200-99523400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr10:99499400-99519000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr10:99499400-99522000	Strong transcription	Stomach Smooth Muscle	stomach
37	chr10:99499400-99522400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr10:99499600-99504600	Strong transcription	Primary hematopoietic stem cells	blood
39	chr10:99499600-99519200	Strong transcription	Placenta	Placenta
40	chr10:99499800-99505600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr10:99499800-99518000	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr10:99500000-99503000	Weak transcription	NH-A	brain
43	chr10:99500000-99523000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr10:99500200-99503000	Weak transcription	Brain Hippocampus Middle	brain
45	chr10:99500200-99518000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr10:99500400-99522000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr10:99500600-99504000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr10:99500600-99506800	Weak transcription	Hela-S3	cervix
49	chr10:99500600-99523200	Strong transcription	Brain Germinal Matrix	brain
50	chr10:99500800-99503200	Weak transcription	Muscle Satellite Cultured Cells	--

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