Variant report

Variant	rs28549815
Chromosome Location	chr10:99543609-99543610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11189364	0.85[ASN][1000 genomes]
rs11189365	0.85[ASN][1000 genomes]
rs11189370	0.85[ASN][1000 genomes]
rs11189371	0.85[ASN][1000 genomes]
rs12249137	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12249138	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264638	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266257	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12269197	0.85[ASN][1000 genomes]
rs13377035	0.85[ASN][1000 genomes]
rs1544178	0.85[ASN][1000 genomes]
rs17108378	0.85[ASN][1000 genomes]
rs1934562	0.96[ASN][1000 genomes]
rs2185365	0.96[ASN][1000 genomes]
rs3750613	0.88[ASN][1000 genomes]
rs4378321	0.89[ASN][1000 genomes]
rs58554424	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6584151	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6584152	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7097247	0.85[ASN][1000 genomes]
rs73324634	0.89[ASN][1000 genomes]
rs73324671	0.81[ASN][1000 genomes]
rs73324700	0.85[ASN][1000 genomes]
rs73326541	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs946783	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99537000-99545600	Enhancers	Pancreas	Pancrea
2	chr10:99540400-99544600	Genic enhancers	Fetal Intestine Small	intestine
3	chr10:99540800-99545800	Enhancers	HepG2	liver
4	chr10:99541000-99548600	Weak transcription	A549	lung
5	chr10:99541400-99546400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:99541600-99545000	Weak transcription	HMEC	breast
7	chr10:99541800-99548400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:99541800-99548600	Weak transcription	Right Atrium	heart
9	chr10:99541800-99548800	Weak transcription	Right Ventricle	heart
10	chr10:99542000-99543800	Weak transcription	Brain Substantia Nigra	brain
11	chr10:99542000-99546200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:99542200-99543800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr10:99542200-99546000	Weak transcription	Lung	lung
14	chr10:99542400-99544000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr10:99542400-99544400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr10:99542400-99544600	Enhancers	Duodenum Mucosa	Duodenum
17	chr10:99542600-99546400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:99542600-99548400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr10:99542800-99544000	Weak transcription	Gastric	stomach
20	chr10:99542800-99545000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:99542800-99547800	Weak transcription	Stomach Mucosa	stomach
22	chr10:99542800-99548400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr10:99542800-99548600	Weak transcription	Fetal Lung	lung
24	chr10:99543000-99544400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr10:99543000-99547600	Weak transcription	K562	blood
26	chr10:99543000-99548400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr10:99543000-99551400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr10:99543200-99545000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:99543200-99545000	Weak transcription	NHEK	skin
30	chr10:99543200-99548400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr10:99543200-99548400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr10:99543200-99548400	Weak transcription	Left Ventricle	heart
33	chr10:99543200-99551400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr10:99543400-99543800	Weak transcription	Fetal Intestine Large	intestine

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