Variant report

Variant	rs73326541
Chromosome Location	chr10:99551734-99551735
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99550812..99553311-chr10:99554248..99556585,2	K562	blood:
2	chr10:99551408..99552738-chr10:99628911..99630531,8	MCF-7	breast:
3	chr10:99551392..99552453-chr10:99628753..99630092,20	MCF-7	breast:
4	chr10:99551429..99551962-chr10:99608505..99609236,2	MCF-7	breast:
5	chr10:99550725..99552245-chr6:30882262..30884722,2	K562	blood:
6	chr10:99551206..99553289-chr10:99627120..99629678,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137411	Chromatin interaction
ENSG00000269783	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11189364	0.92[ASN][1000 genomes]
rs11189365	0.92[ASN][1000 genomes]
rs11189370	0.92[ASN][1000 genomes]
rs11189371	0.92[ASN][1000 genomes]
rs12249138	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12264638	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12266257	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12269197	0.92[ASN][1000 genomes]
rs13377035	0.92[ASN][1000 genomes]
rs1544178	0.92[ASN][1000 genomes]
rs17108378	0.92[ASN][1000 genomes]
rs1934562	0.81[ASN][1000 genomes]
rs2185365	0.81[ASN][1000 genomes]
rs28549815	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3750613	0.96[ASN][1000 genomes]
rs4378321	0.81[ASN][1000 genomes]
rs58554424	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6584151	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6584152	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7097247	0.92[ASN][1000 genomes]
rs73324634	0.81[ASN][1000 genomes]
rs73324671	0.88[ASN][1000 genomes]
rs73324700	0.92[ASN][1000 genomes]
rs946783	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99548800-99556400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:99549000-99555000	Weak transcription	Left Ventricle	heart
3	chr10:99549200-99552000	Enhancers	K562	blood
4	chr10:99549200-99552800	Weak transcription	Right Atrium	heart
5	chr10:99549400-99551800	Enhancers	Fetal Intestine Large	intestine
6	chr10:99549400-99551800	Enhancers	Fetal Intestine Small	intestine
7	chr10:99549800-99553600	Enhancers	Pancreas	Pancrea
8	chr10:99550000-99552000	Weak transcription	Fetal Thymus	thymus
9	chr10:99550800-99551800	Enhancers	Gastric	stomach
10	chr10:99551000-99551800	Enhancers	A549	lung
11	chr10:99551200-99552000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr10:99551200-99552200	Enhancers	Duodenum Mucosa	Duodenum
13	chr10:99551400-99551800	Bivalent Enhancer	Fetal Muscle Leg	muscle
14	chr10:99551400-99552200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:99551400-99552400	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr10:99551400-99552600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr10:99551400-99552600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
18	chr10:99551400-99552600	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr10:99551400-99552600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:99551400-99553000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr10:99551400-99553400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr10:99551600-99551800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr10:99551600-99551800	Bivalent Enhancer	Brain Germinal Matrix	brain
24	chr10:99551600-99551800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
25	chr10:99551600-99551800	Bivalent Enhancer	Fetal Stomach	stomach
26	chr10:99551600-99551800	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
27	chr10:99551600-99552000	Enhancers	Primary B cells from peripheral blood	blood
28	chr10:99551600-99552000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:99551600-99552000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
30	chr10:99551600-99552200	Enhancers	Brain Anterior Caudate	brain
31	chr10:99551600-99552400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
32	chr10:99551600-99552400	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr10:99551600-99552400	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr10:99551600-99552400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr10:99551600-99552400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
36	chr10:99551600-99552800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr10:99551600-99553000	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr10:99551600-99553000	Enhancers	Primary T killer memory cells from peripheral blood	blood

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