Variant report

Variant	rs73324671
Chromosome Location	chr10:99517795-99517796
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11189364	0.88[ASN][1000 genomes]
rs11189365	0.88[ASN][1000 genomes]
rs11189370	0.88[ASN][1000 genomes]
rs11189371	0.88[ASN][1000 genomes]
rs12249138	0.81[ASN][1000 genomes]
rs12264638	0.81[ASN][1000 genomes]
rs12266257	0.81[ASN][1000 genomes]
rs12269197	0.88[ASN][1000 genomes]
rs13377035	0.88[ASN][1000 genomes]
rs1544178	0.88[ASN][1000 genomes]
rs17108378	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28549815	0.81[ASN][1000 genomes]
rs3750613	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4378321	0.95[EUR][1000 genomes]
rs58554424	0.88[ASN][1000 genomes]
rs6584152	0.81[ASN][1000 genomes]
rs7097247	0.88[ASN][1000 genomes]
rs73324634	0.90[EUR][1000 genomes]
rs73324700	0.88[ASN][1000 genomes]
rs73326541	0.88[ASN][1000 genomes]
rs946783	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv467441	chr10:99472710-99541104	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv552026	chr10:99472710-99541104	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99497600-99522600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:99498200-99520600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:99498400-99519000	Strong transcription	Fetal Intestine Large	intestine
4	chr10:99498400-99519200	Strong transcription	Fetal Muscle Trunk	muscle
5	chr10:99498600-99517800	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr10:99498600-99518000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:99498600-99518000	Strong transcription	Fetal Thymus	thymus
8	chr10:99498600-99520200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:99498600-99520600	Strong transcription	Osteobl	bone
10	chr10:99498600-99522200	Strong transcription	Rectal Mucosa Donor 29	rectum
11	chr10:99498600-99522400	Strong transcription	Duodenum Mucosa	Duodenum
12	chr10:99498600-99522400	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr10:99498600-99523000	Strong transcription	Thymus	Thymus
14	chr10:99498600-99523600	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr10:99498600-99524800	Weak transcription	Fetal Brain Male	brain
16	chr10:99498800-99522400	Strong transcription	Dnd41	blood
17	chr10:99499000-99517800	Strong transcription	Skeletal Muscle Female	skeletal muscle
18	chr10:99499000-99518000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:99499200-99518000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:99499200-99522800	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr10:99499200-99523400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr10:99499400-99519000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr10:99499400-99522000	Strong transcription	Stomach Smooth Muscle	stomach
24	chr10:99499400-99522400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr10:99499600-99519200	Strong transcription	Placenta	Placenta
26	chr10:99499800-99518000	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr10:99500000-99523000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr10:99500200-99518000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr10:99500400-99522000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr10:99500600-99523200	Strong transcription	Brain Germinal Matrix	brain
31	chr10:99500800-99517800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr10:99500800-99518800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr10:99502000-99517800	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr10:99502000-99517800	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr10:99502000-99518000	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr10:99502000-99522800	Strong transcription	Primary B cells from peripheral blood	blood
37	chr10:99502200-99522600	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr10:99502400-99520000	Strong transcription	Primary B cells from cord blood	blood
39	chr10:99502600-99517800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr10:99502600-99518000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr10:99502600-99519200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr10:99502600-99522600	Strong transcription	Primary T cells from cord blood	blood
43	chr10:99502800-99518000	Strong transcription	A549	lung
44	chr10:99502800-99521600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr10:99502800-99522600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr10:99503000-99524000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr10:99503200-99519000	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr10:99503400-99518000	Strong transcription	Skeletal Muscle Male	skeletal muscle
49	chr10:99503400-99522200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr10:99503400-99522800	Strong transcription	Liver	Liver

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