Variant report

Variant	rs12269197
Chromosome Location	chr10:99527939-99527940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99523562..99525192-chr10:99527348..99530320,2	MCF-7	breast:
2	chr10:99526747..99528824-chr10:99529529..99531423,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11189364	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11189365	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11189370	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11189371	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249138	0.85[ASN][1000 genomes]
rs12264638	0.85[ASN][1000 genomes]
rs12266257	0.85[ASN][1000 genomes]
rs13377035	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1544178	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108378	0.92[ASN][1000 genomes]
rs1934562	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2185365	0.95[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28549815	0.85[ASN][1000 genomes]
rs3750613	0.96[ASN][1000 genomes]
rs4378321	0.81[ASN][1000 genomes]
rs58554424	0.92[ASN][1000 genomes]
rs6584151	0.81[ASN][1000 genomes]
rs6584152	0.85[ASN][1000 genomes]
rs7095551	0.89[EUR][1000 genomes]
rs7097247	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73324634	0.81[ASN][1000 genomes]
rs73324671	0.88[ASN][1000 genomes]
rs73324700	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73326541	0.92[ASN][1000 genomes]
rs946783	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv467441	chr10:99472710-99541104	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv552026	chr10:99472710-99541104	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99520200-99528400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:99520400-99529200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:99520400-99530400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr10:99520600-99528400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:99521600-99528200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr10:99522200-99528000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:99522200-99530800	Weak transcription	Right Ventricle	heart
8	chr10:99522400-99528200	Weak transcription	Aorta	Aorta
9	chr10:99522400-99528400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:99522400-99529000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr10:99522400-99530200	Weak transcription	A549	lung
12	chr10:99522600-99528400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr10:99522600-99530000	Weak transcription	Fetal Intestine Large	intestine
14	chr10:99522600-99530400	Weak transcription	Primary T cells from cord blood	blood
15	chr10:99522800-99528200	Weak transcription	Colonic Mucosa	Colon
16	chr10:99522800-99529400	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr10:99523200-99528200	Weak transcription	Brain Germinal Matrix	brain
18	chr10:99523200-99530400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr10:99523400-99528000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr10:99523400-99529000	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr10:99523600-99528000	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr10:99523600-99528800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr10:99524200-99530200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr10:99524600-99528200	Weak transcription	Primary B cells from cord blood	blood
25	chr10:99524600-99528800	Weak transcription	Thymus	Thymus
26	chr10:99524800-99529200	Weak transcription	GM12878-XiMat	blood
27	chr10:99525000-99530400	Weak transcription	Primary B cells from peripheral blood	blood
28	chr10:99525400-99529000	Weak transcription	Duodenum Mucosa	Duodenum
29	chr10:99525400-99529000	Strong transcription	Fetal Intestine Small	intestine
30	chr10:99525600-99528400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr10:99525600-99528600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr10:99525800-99530400	Weak transcription	HSMM	muscle
33	chr10:99526200-99528600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:99526400-99528000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr10:99526400-99531200	Weak transcription	K562	blood
36	chr10:99527000-99528800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr10:99527200-99528000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr10:99527200-99528800	Genic enhancers	Pancreas	Pancrea
39	chr10:99527600-99530600	Weak transcription	Gastric	stomach
40	chr10:99527800-99528000	Enhancers	HSMMtube	muscle

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