Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11189364	1.00[ASN][1000 genomes]
rs11189365	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11189371	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249138	0.85[ASN][1000 genomes]
rs12264638	0.85[ASN][1000 genomes]
rs12266257	0.85[ASN][1000 genomes]
rs12269197	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13377035	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1544178	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108378	0.86[CHB][hapmap];0.92[ASN][1000 genomes]
rs1934562	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2185365	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs28549815	0.85[ASN][1000 genomes]
rs3750613	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4378321	0.81[ASN][1000 genomes]
rs58554424	0.92[ASN][1000 genomes]
rs6584151	0.81[ASN][1000 genomes]
rs6584152	0.85[ASN][1000 genomes]
rs7095551	0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7097247	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73324634	0.81[ASN][1000 genomes]
rs73324671	0.88[ASN][1000 genomes]
rs73324700	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73326541	0.92[ASN][1000 genomes]
rs946783	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv467441	chr10:99472710-99541104	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv552026	chr10:99472710-99541104	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99532000-99540200	Weak transcription	Right Atrium	heart
2	chr10:99532800-99541000	Weak transcription	Gastric	stomach
3	chr10:99533600-99538200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:99533600-99541400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:99533800-99538200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:99535200-99536800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:99535200-99537000	Weak transcription	Fetal Intestine Large	intestine
8	chr10:99535200-99537000	Weak transcription	Pancreas	Pancrea
9	chr10:99535600-99536800	Weak transcription	Fetal Intestine Small	intestine
10	chr10:99535800-99536800	Weak transcription	HepG2	liver
11	chr10:99535800-99537200	Weak transcription	Fetal Thymus	thymus

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