Variant report

Variant	rs7096271
Chromosome Location	chr10:4146461-4146462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10736987	1.00[AFR][1000 genomes]
rs1923404	0.86[AFR][1000 genomes]
rs2397406	0.89[AFR][1000 genomes]
rs2397407	1.00[AFR][1000 genomes]
rs2397409	1.00[AFR][1000 genomes]
rs2894885	1.00[AFR][1000 genomes]
rs4881288	0.92[AFR][1000 genomes]
rs4881289	1.00[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4881292	1.00[AFR][1000 genomes]
rs4881294	0.94[AFR][1000 genomes]
rs4881295	1.00[AFR][1000 genomes]
rs4881296	0.94[AFR][1000 genomes]
rs7076404	1.00[AFR][1000 genomes]
rs7092257	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7100392	1.00[AFR][1000 genomes]
rs7902310	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4132600-4148600	Weak transcription	Gastric	stomach
2	chr10:4144000-4147200	Enhancers	Hela-S3	cervix
3	chr10:4145600-4146600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:4145800-4153400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr10:4146400-4152400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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