Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4145306..4147487-chr10:4150216..4152593,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10736987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10795135	1.00[AMR][1000 genomes]
rs10795137	1.00[AMR][1000 genomes]
rs1923393	1.00[AMR][1000 genomes]
rs1923404	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2397406	0.89[AFR][1000 genomes]
rs2397407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2397409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4881288	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4881289	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4881292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4881294	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4881295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4881296	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6601816	1.00[AMR][1000 genomes]
rs7071392	1.00[AMR][1000 genomes]
rs7076404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7077190	1.00[AMR][1000 genomes]
rs7092257	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7096271	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7100392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7902310	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7908789	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4145800-4153400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr10:4146400-4152400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:4146600-4153400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:4147200-4152800	Weak transcription	Hela-S3	cervix
5	chr10:4151800-4153200	Weak transcription	Osteobl	bone
6	chr10:4152000-4153800	Weak transcription	HUVEC	blood vessel
7	chr10:4152200-4152400	Enhancers	NHLF	lung
8	chr10:4152200-4153400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:4152200-4153400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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