Variant report

Variant	rs10795137
Chromosome Location	chr10:4169950-4169951
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:3825405..3829399-chr10:4168357..4172262,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10736987	1.00[AMR][1000 genomes]
rs10795135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1923393	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1923404	1.00[AMR][1000 genomes]
rs2397407	1.00[AMR][1000 genomes]
rs2397409	1.00[AMR][1000 genomes]
rs2894885	1.00[AMR][1000 genomes]
rs4881288	1.00[AMR][1000 genomes]
rs4881289	1.00[AMR][1000 genomes]
rs4881292	1.00[AMR][1000 genomes]
rs4881294	1.00[AMR][1000 genomes]
rs4881295	1.00[AMR][1000 genomes]
rs4881296	1.00[AMR][1000 genomes]
rs6601816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7071392	1.00[AMR][1000 genomes]
rs7076404	1.00[AMR][1000 genomes]
rs7077190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7091315	0.81[AFR][1000 genomes]
rs7092257	1.00[AMR][1000 genomes]
rs7100392	1.00[AMR][1000 genomes]
rs7902310	1.00[AMR][1000 genomes]
rs7908789	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4163000-4173400	Weak transcription	NHLF	lung
2	chr10:4164000-4170000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr10:4167200-4174200	Weak transcription	Pancreas	Pancrea
4	chr10:4167800-4171800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:4168800-4170000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:4169000-4170200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr10:4169400-4173400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr10:4169400-4175200	Enhancers	Primary B cells from peripheral blood	blood
9	chr10:4169600-4170000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:4169600-4170000	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr10:4169600-4170400	Enhancers	GM12878-XiMat	blood
12	chr10:4169600-4170600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr10:4169600-4170800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr10:4169600-4170800	Enhancers	Duodenum Mucosa	Duodenum
15	chr10:4169600-4171000	Enhancers	Primary T cells fromperipheralblood	blood
16	chr10:4169600-4171000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr10:4169600-4171000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr10:4169600-4171000	Enhancers	Adipose Nuclei	Adipose
19	chr10:4169600-4171000	Enhancers	Stomach Mucosa	stomach
20	chr10:4169600-4171200	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr10:4169600-4171200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr10:4169600-4172400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:4169600-4172600	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr10:4169600-4172600	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr10:4169600-4172800	Enhancers	Primary B cells from cord blood	blood
26	chr10:4169600-4172800	Enhancers	HUVEC	blood vessel
27	chr10:4169600-4173200	Enhancers	Primary hematopoietic stem cells	blood
28	chr10:4169600-4173200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr10:4169800-4170000	Enhancers	Gastric	stomach
30	chr10:4169800-4170000	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr10:4169800-4170200	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr10:4169800-4170400	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr10:4169800-4170600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr10:4169800-4170600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr10:4169800-4170600	Enhancers	Dnd41	blood
36	chr10:4169800-4170800	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr10:4169800-4170800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr10:4169800-4170800	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr10:4169800-4170800	Enhancers	Primary T cells from cord blood	blood
40	chr10:4169800-4170800	Enhancers	Brain Germinal Matrix	brain
41	chr10:4169800-4170800	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr10:4169800-4170800	Enhancers	Fetal Thymus	thymus
43	chr10:4169800-4170800	Enhancers	Rectal Mucosa Donor 29	rectum
44	chr10:4169800-4170800	Enhancers	Small Intestine	intestine
45	chr10:4169800-4171000	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr10:4169800-4171000	Enhancers	Sigmoid Colon	Sigmoid Colon
47	chr10:4169800-4171000	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr10:4169800-4171000	Enhancers	Spleen	Spleen
49	chr10:4169800-4171000	Enhancers	HepG2	liver

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