Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4164939..4167456-chr10:4170244..4172717,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10736987	1.00[AMR][1000 genomes]
rs10795135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10795137	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1923393	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1923404	1.00[AMR][1000 genomes]
rs2397407	1.00[AMR][1000 genomes]
rs2397409	1.00[AMR][1000 genomes]
rs2894885	1.00[AMR][1000 genomes]
rs4881288	1.00[AMR][1000 genomes]
rs4881289	1.00[AMR][1000 genomes]
rs4881292	1.00[AMR][1000 genomes]
rs4881294	1.00[AMR][1000 genomes]
rs4881295	1.00[AMR][1000 genomes]
rs4881296	1.00[AMR][1000 genomes]
rs7071392	1.00[AMR][1000 genomes]
rs7076404	1.00[AMR][1000 genomes]
rs7077190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7091315	0.81[AFR][1000 genomes]
rs7092257	1.00[AMR][1000 genomes]
rs7100392	1.00[AMR][1000 genomes]
rs7902310	1.00[AMR][1000 genomes]
rs7908789	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4162800-4165800	Enhancers	Fetal Lung	lung
2	chr10:4163000-4166800	Weak transcription	Pancreas	Pancrea
3	chr10:4163000-4173400	Weak transcription	NHLF	lung
4	chr10:4164000-4167000	Weak transcription	Left Ventricle	heart
5	chr10:4164000-4170000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr10:4164200-4165600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr10:4164400-4166000	Enhancers	Fetal Heart	heart
8	chr10:4164400-4169600	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr10:4164600-4169600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:4165200-4166000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:4165400-4165600	Enhancers	Primary B cells from peripheral blood	blood
12	chr10:4165400-4166000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:4165400-4166000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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