Variant report

Variant	rs2397407
Chromosome Location	chr10:4153072-4153073
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10736987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10795135	1.00[AMR][1000 genomes]
rs10795137	1.00[AMR][1000 genomes]
rs1923393	1.00[AMR][1000 genomes]
rs1923404	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2397406	0.89[AFR][1000 genomes]
rs2397409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2894885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4881288	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4881289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4881292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4881294	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4881295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4881296	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6601816	1.00[AMR][1000 genomes]
rs7071392	1.00[AMR][1000 genomes]
rs7076404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7077190	1.00[AMR][1000 genomes]
rs7092257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7096271	1.00[AFR][1000 genomes]
rs7100392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7902310	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7908789	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4145800-4153400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr10:4146600-4153400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:4151800-4153200	Weak transcription	Osteobl	bone
4	chr10:4152000-4153800	Weak transcription	HUVEC	blood vessel
5	chr10:4152200-4153400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:4152200-4153400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:4152400-4154400	Weak transcription	NHLF	lung
8	chr10:4153000-4153200	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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