Variant report

Variant	rs7099568
Chromosome Location	chr10:61220923-61220924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1901179	1.00[JPT][hapmap]
rs284610	1.00[JPT][hapmap]
rs284614	1.00[JPT][hapmap]
rs284633	1.00[JPT][hapmap]
rs410191	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs428063	0.81[EUR][1000 genomes]
rs453670	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs930680	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508587	chr10:61150897-61278845	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv895564	chr10:61220923-61327502	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7099568	FAM13C	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61215000-61221200	Weak transcription	Ovary	ovary
2	chr10:61216800-61222000	Weak transcription	HSMM	muscle
3	chr10:61220600-61221400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:61220800-61221400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links