Variant report

Variant	rs7103208
Chromosome Location	chr11:15816484-15816485
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11023723	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12270603	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12273213	1.00[EUR][1000 genomes]
rs16932069	1.00[EUR][1000 genomes]
rs60252948	1.00[EUR][1000 genomes]
rs7103463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7113987	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72860617	0.96[EUR][1000 genomes]
rs72860632	1.00[EUR][1000 genomes]
rs72860635	1.00[EUR][1000 genomes]
rs72860641	1.00[EUR][1000 genomes]
rs72860643	1.00[EUR][1000 genomes]
rs72860650	1.00[EUR][1000 genomes]
rs72860659	0.96[EUR][1000 genomes]
rs72860660	0.96[EUR][1000 genomes]
rs7930573	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051187	chr11:15781277-15846536	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2760185	chr11:15808636-15816484	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15813800-15828800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:15814000-15816600	Enhancers	NH-A	brain
3	chr11:15814600-15817400	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr11:15815800-15821200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:15816000-15816600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:15816200-15820800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:15816200-15821400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:15816400-15817200	Enhancers	Psoas Muscle	Psoas
9	chr11:15816400-15821200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:15816400-15821200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr11:15816400-15821200	Weak transcription	Osteobl	bone
12	chr11:15816400-15821600	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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