Variant report

Variant	rs72860632
Chromosome Location	chr11:15814925-15814926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10219159	0.84[AFR][1000 genomes]
rs11023723	0.96[EUR][1000 genomes]
rs12270603	1.00[EUR][1000 genomes]
rs12273213	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60252948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7103208	1.00[EUR][1000 genomes]
rs7103463	1.00[EUR][1000 genomes]
rs7113987	1.00[EUR][1000 genomes]
rs72860617	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72860635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72860641	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72860643	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72860650	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72860659	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72860660	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7930573	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051187	chr11:15781277-15846536	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2760185	chr11:15808636-15816484	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15813800-15828800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:15814000-15815000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:15814000-15816400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr11:15814000-15816400	Enhancers	Osteobl	bone
5	chr11:15814000-15816600	Enhancers	NH-A	brain
6	chr11:15814200-15815800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:15814200-15815800	Enhancers	NHEK	skin
8	chr11:15814400-15815800	Enhancers	HMEC	breast
9	chr11:15814400-15816200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:15814600-15816000	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr11:15814600-15816200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:15814600-15817400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr11:15814800-15815400	Enhancers	NHLF	lung
14	chr11:15814800-15816400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:15814800-15816400	Enhancers	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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