Variant report

Variant	rs72860643
Chromosome Location	chr11:15817097-15817098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11023723	0.96[EUR][1000 genomes]
rs12270603	1.00[EUR][1000 genomes]
rs12273213	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932069	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60252948	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7103208	1.00[EUR][1000 genomes]
rs7103463	1.00[EUR][1000 genomes]
rs7113987	1.00[EUR][1000 genomes]
rs72860617	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72860632	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72860635	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72860641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72860650	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72860659	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72860660	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73417041	1.00[ASN][1000 genomes]
rs7930573	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051187	chr11:15781277-15846536	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15813800-15828800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:15814600-15817400	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr11:15815800-15821200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:15816200-15820800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:15816200-15821400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:15816400-15817200	Enhancers	Psoas Muscle	Psoas
7	chr11:15816400-15821200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:15816400-15821200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:15816400-15821200	Weak transcription	Osteobl	bone
10	chr11:15816400-15821600	Weak transcription	HSMM	muscle
11	chr11:15816600-15821400	Weak transcription	NH-A	brain
12	chr11:15817000-15817200	Enhancers	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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