Variant report

Variant	rs72860660
Chromosome Location	chr11:15825605-15825606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11023723	1.00[EUR][1000 genomes]
rs12270603	0.96[EUR][1000 genomes]
rs12273213	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16932069	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60252948	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7103208	0.96[EUR][1000 genomes]
rs7103463	0.96[EUR][1000 genomes]
rs7113987	0.96[EUR][1000 genomes]
rs72860617	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72860632	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72860635	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72860641	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72860643	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72860650	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72860659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7930573	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051187	chr11:15781277-15846536	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1037145	chr11:15818508-15830938	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15813800-15828800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:15821600-15829200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:15822000-15827800	Weak transcription	Aorta	Aorta
4	chr11:15824000-15827000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr11:15824200-15827200	Weak transcription	Osteobl	bone
6	chr11:15824800-15826000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:15824800-15828600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:15825600-15826200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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