Variant report

Variant	rs73417041
Chromosome Location	chr11:16015826-16015827
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10741691	1.00[AMR][1000 genomes]
rs10766297	1.00[AMR][1000 genomes]
rs10766299	1.00[AMR][1000 genomes]
rs1455107	1.00[AMR][1000 genomes]
rs1455108	1.00[AMR][1000 genomes]
rs1455110	1.00[AMR][1000 genomes]
rs1455116	1.00[AMR][1000 genomes]
rs2882810	1.00[AMR][1000 genomes]
rs2935045	1.00[AMR][1000 genomes]
rs35350728	1.00[AMR][1000 genomes]
rs58616573	1.00[AMR][1000 genomes]
rs61095638	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6486274	1.00[AMR][1000 genomes]
rs72860643	1.00[ASN][1000 genomes]
rs73417034	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417035	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417039	1.00[AMR][1000 genomes]
rs73417044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417052	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417068	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417077	1.00[AMR][1000 genomes]
rs73417079	1.00[AMR][1000 genomes]
rs73418928	1.00[AMR][1000 genomes]
rs921799	1.00[AMR][1000 genomes]
rs995968	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15999400-16022800	Weak transcription	K562	blood
2	chr11:16004800-16024600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:16007800-16023000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:16008000-16022800	Weak transcription	Fetal Intestine Small	intestine
5	chr11:16010800-16021600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:16010800-16022800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:16010800-16022800	Weak transcription	Fetal Intestine Large	intestine
8	chr11:16011000-16019200	Weak transcription	Right Atrium	heart
9	chr11:16011000-16033800	Weak transcription	Left Ventricle	heart
10	chr11:16011200-16021400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:16011400-16023000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:16013600-16020200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr11:16013800-16016000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:16015600-16023600	Weak transcription	Fetal Muscle Leg	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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