Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16141343..16143231-chr11:16172606..16175476,2	K562	blood:
2	chr11:16171743..16174574-chr11:16176679..16178983,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10741691	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10766297	0.90[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10766299	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1455107	1.00[AMR][1000 genomes]
rs1455108	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1455110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1455116	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2935045	1.00[AMR][1000 genomes]
rs35350728	1.00[AMR][1000 genomes]
rs58616573	1.00[AMR][1000 genomes]
rs61095638	1.00[AMR][1000 genomes]
rs6486274	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417034	1.00[AMR][1000 genomes]
rs73417035	1.00[AMR][1000 genomes]
rs73417039	1.00[AMR][1000 genomes]
rs73417041	1.00[AMR][1000 genomes]
rs73417044	1.00[AMR][1000 genomes]
rs73417052	1.00[AMR][1000 genomes]
rs73417068	1.00[AMR][1000 genomes]
rs73417077	1.00[AMR][1000 genomes]
rs73417079	1.00[AMR][1000 genomes]
rs73418928	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs921799	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs995968	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16169200-16174200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:16169800-16174400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:16170800-16175800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr11:16171000-16173800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:16171000-16175200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:16171400-16173400	Weak transcription	HepG2	liver
7	chr11:16171600-16175600	Weak transcription	Fetal Intestine Large	intestine
8	chr11:16172000-16173800	Weak transcription	Psoas Muscle	Psoas
9	chr11:16172400-16176000	Weak transcription	Fetal Intestine Small	intestine
10	chr11:16172400-16191400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:16172600-16173600	Weak transcription	Fetal Lung	lung
12	chr11:16172600-16191400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:16173000-16173800	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr11:16173000-16174400	Enhancers	A549	lung

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