Variant report

Variant	rs61095638
Chromosome Location	chr11:16033475-16033476
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16033382..16036196-chr11:16045412..16048891,3	K562	blood:
2	chr11:16031461..16033992-chr11:16035845..16037535,2	K562	blood:
3	chr11:16031398..16034021-chr11:16626227..16628644,2	K562	blood:
4	chr11:16032786..16036451-chr11:16039084..16041674,3	K562	blood:
5	chr11:16031461..16034142-chr11:16036035..16038140,2	K562	blood:

Variant related genes	Relation type
ENSG00000110693	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10741691	1.00[AMR][1000 genomes]
rs10766297	1.00[AMR][1000 genomes]
rs10766299	1.00[AMR][1000 genomes]
rs1455107	1.00[AMR][1000 genomes]
rs1455108	1.00[AMR][1000 genomes]
rs1455110	1.00[AMR][1000 genomes]
rs1455116	1.00[AMR][1000 genomes]
rs2882810	1.00[AMR][1000 genomes]
rs2935045	1.00[AMR][1000 genomes]
rs35350728	1.00[AMR][1000 genomes]
rs58616573	1.00[AMR][1000 genomes]
rs6486274	1.00[AMR][1000 genomes]
rs73417034	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417035	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417039	1.00[AMR][1000 genomes]
rs73417041	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417044	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417052	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417068	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417077	1.00[AMR][1000 genomes]
rs73417079	1.00[AMR][1000 genomes]
rs73418928	1.00[AMR][1000 genomes]
rs921799	1.00[AMR][1000 genomes]
rs995968	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1045933	chr11:16023805-16067955	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16011000-16033800	Weak transcription	Left Ventricle	heart
2	chr11:16023400-16035400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:16023800-16033800	Weak transcription	Small Intestine	intestine
4	chr11:16023800-16035000	Weak transcription	Brain Substantia Nigra	brain
5	chr11:16023800-16050400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:16024400-16067200	Weak transcription	Liver	Liver
7	chr11:16024800-16088200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:16025200-16034800	Weak transcription	Psoas Muscle	Psoas
9	chr11:16028000-16036800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:16028200-16033800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr11:16029600-16034800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:16029800-16033800	Weak transcription	Fetal Heart	heart
13	chr11:16030600-16033800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr11:16030600-16034000	Weak transcription	Fetal Intestine Large	intestine
15	chr11:16031400-16033800	Weak transcription	Fetal Lung	lung
16	chr11:16032400-16036000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:16032600-16035000	Enhancers	K562	blood
18	chr11:16033000-16033600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:16033000-16034200	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr11:16033000-16034400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr11:16033000-16034800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:16033000-16035000	Strong transcription	Fetal Intestine Small	intestine
23	chr11:16033000-16038200	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr11:16033200-16034000	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr11:16033200-16034200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:16033200-16034200	Enhancers	Placenta	Placenta
27	chr11:16033200-16034200	Enhancers	Pancreas	Pancrea
28	chr11:16033200-16034400	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr11:16033200-16038200	Enhancers	Fetal Muscle Leg	muscle
30	chr11:16033400-16034200	Enhancers	Gastric	stomach
31	chr11:16033400-16034200	Enhancers	HSMMtube	muscle
32	chr11:16033400-16036000	Enhancers	Fetal Kidney	kidney

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