Variant report

Variant	rs58616573
Chromosome Location	chr11:16061108-16061109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16060678..16062242-chr11:16069879..16072547,3	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10741691	1.00[AMR][1000 genomes]
rs10766297	1.00[AMR][1000 genomes]
rs10766299	1.00[AMR][1000 genomes]
rs1455107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1455108	1.00[AMR][1000 genomes]
rs1455110	1.00[AMR][1000 genomes]
rs1455116	1.00[AMR][1000 genomes]
rs2882810	1.00[AMR][1000 genomes]
rs2935045	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35350728	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61095638	1.00[AMR][1000 genomes]
rs6486274	1.00[AMR][1000 genomes]
rs73417034	1.00[AMR][1000 genomes]
rs73417035	1.00[AMR][1000 genomes]
rs73417039	1.00[AMR][1000 genomes]
rs73417041	1.00[AMR][1000 genomes]
rs73417044	1.00[AMR][1000 genomes]
rs73417052	1.00[AMR][1000 genomes]
rs73417068	1.00[AMR][1000 genomes]
rs73417077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73418928	1.00[AMR][1000 genomes]
rs921799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs995968	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1045933	chr11:16023805-16067955	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv8667	chr11:16061077-16061283	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16024400-16067200	Weak transcription	Liver	Liver
2	chr11:16024800-16088200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:16034200-16079200	Weak transcription	Pancreas	Pancrea
4	chr11:16036000-16073800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:16037600-16081200	Weak transcription	Psoas Muscle	Psoas
6	chr11:16038200-16065000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:16038200-16067200	Weak transcription	Fetal Muscle Leg	muscle
8	chr11:16043000-16102000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:16050000-16076200	Weak transcription	Fetal Kidney	kidney
10	chr11:16051000-16072400	Weak transcription	Esophagus	oesophagus
11	chr11:16053600-16061600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:16054200-16066800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr11:16054800-16062800	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr11:16055000-16064800	Weak transcription	Fetal Intestine Large	intestine
15	chr11:16056400-16065000	Weak transcription	Fetal Heart	heart
16	chr11:16056600-16067200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr11:16056600-16077200	Weak transcription	Right Ventricle	heart
18	chr11:16057600-16065200	Weak transcription	Left Ventricle	heart
19	chr11:16058000-16064800	Weak transcription	Fetal Intestine Small	intestine
20	chr11:16058600-16061800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:16058600-16066800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:16059400-16067800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:16060200-16061800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:16060200-16063200	Enhancers	Pancreatic Islets	Pancreatic Islet

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