Variant report

Variant	rs73417077
Chromosome Location	chr11:16074368-16074369
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10741691	1.00[AMR][1000 genomes]
rs10766297	1.00[AMR][1000 genomes]
rs10766299	1.00[AMR][1000 genomes]
rs1455107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1455108	1.00[AMR][1000 genomes]
rs1455110	1.00[AMR][1000 genomes]
rs1455116	1.00[AMR][1000 genomes]
rs2882810	1.00[AMR][1000 genomes]
rs2935045	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35350728	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58616573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61095638	1.00[AMR][1000 genomes]
rs6486274	1.00[AMR][1000 genomes]
rs73417034	1.00[AMR][1000 genomes]
rs73417035	1.00[AMR][1000 genomes]
rs73417039	1.00[AMR][1000 genomes]
rs73417041	1.00[AMR][1000 genomes]
rs73417044	1.00[AMR][1000 genomes]
rs73417052	1.00[AMR][1000 genomes]
rs73417068	1.00[AMR][1000 genomes]
rs73417079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73418928	1.00[AMR][1000 genomes]
rs921799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs995968	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16024800-16088200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:16034200-16079200	Weak transcription	Pancreas	Pancrea
3	chr11:16037600-16081200	Weak transcription	Psoas Muscle	Psoas
4	chr11:16043000-16102000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:16050000-16076200	Weak transcription	Fetal Kidney	kidney
6	chr11:16056600-16077200	Weak transcription	Right Ventricle	heart
7	chr11:16065600-16080400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr11:16065600-16085400	Weak transcription	Fetal Heart	heart
9	chr11:16068000-16074400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:16068600-16078800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr11:16068800-16103800	Weak transcription	Left Ventricle	heart
12	chr11:16069000-16074400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:16069000-16074400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:16069400-16079400	Weak transcription	Liver	Liver
15	chr11:16069600-16080400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr11:16069800-16076200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr11:16070200-16077200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr11:16070800-16076000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:16071800-16077200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr11:16072600-16074800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:16073600-16074800	ZNF genes & repeats	Fetal Intestine Small	intestine
22	chr11:16073600-16074800	ZNF genes & repeats	Fetal Muscle Leg	muscle
23	chr11:16073800-16075200	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr11:16074200-16074800	Strong transcription	Fetal Intestine Large	intestine

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