Variant report

Variant	rs73417079
Chromosome Location	chr11:16078258-16078259
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16074909..16076450-chr11:16078066..16080166,2	MCF-7	breast:
2	chr11:16077092..16078616-chr11:16622485..16624723,2	K562	blood:
3	chr11:16076777..16079013-chr11:16089505..16092452,2	K562	blood:
4	chr11:15981455..15982960-chr11:16076117..16079111,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10741691	1.00[AMR][1000 genomes]
rs10766297	1.00[AMR][1000 genomes]
rs10766299	1.00[AMR][1000 genomes]
rs1455107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1455108	1.00[AMR][1000 genomes]
rs1455110	1.00[AMR][1000 genomes]
rs1455116	1.00[AMR][1000 genomes]
rs2882810	1.00[AMR][1000 genomes]
rs2935045	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35350728	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58616573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61095638	1.00[AMR][1000 genomes]
rs6486274	1.00[AMR][1000 genomes]
rs73417034	1.00[AMR][1000 genomes]
rs73417035	1.00[AMR][1000 genomes]
rs73417039	1.00[AMR][1000 genomes]
rs73417041	1.00[AMR][1000 genomes]
rs73417044	1.00[AMR][1000 genomes]
rs73417052	1.00[AMR][1000 genomes]
rs73417068	1.00[AMR][1000 genomes]
rs73417077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73418928	1.00[AMR][1000 genomes]
rs921799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs995968	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16024800-16088200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:16034200-16079200	Weak transcription	Pancreas	Pancrea
3	chr11:16037600-16081200	Weak transcription	Psoas Muscle	Psoas
4	chr11:16043000-16102000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:16065600-16080400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr11:16065600-16085400	Weak transcription	Fetal Heart	heart
7	chr11:16068600-16078800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr11:16068800-16103800	Weak transcription	Left Ventricle	heart
9	chr11:16069400-16079400	Weak transcription	Liver	Liver
10	chr11:16069600-16080400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr11:16074800-16080400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:16074800-16082800	Weak transcription	Fetal Intestine Large	intestine
13	chr11:16074800-16092200	Weak transcription	Fetal Intestine Small	intestine
14	chr11:16075200-16092600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr11:16076200-16080600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:16077200-16078400	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr11:16077200-16078600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
18	chr11:16077200-16078800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr11:16078000-16083000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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