Variant report
| Variant | rs7117078 |
|---|---|
| Chromosome Location | chr11:58091514-58091515 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs11820944 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55708183 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55710682 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55718341 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55824169 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55998491 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56302613 | 1.00[EUR][1000 genomes] |
| rs58175937 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58487339 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59866012 | 1.00[EUR][1000 genomes] |
| rs60168609 | 0.82[EUR][1000 genomes] |
| rs61205173 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7101365 | 0.82[EUR][1000 genomes] |
| rs7109718 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7111538 | 1.00[EUR][1000 genomes] |
| rs7113224 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7113367 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7113462 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7115601 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs7124050 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7126153 | 1.00[ASN][1000 genomes] |
| rs7127027 | 1.00[ASN][1000 genomes] |
| rs7129705 | 1.00[EUR][1000 genomes] |
| rs7926604 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7928023 | 1.00[EUR][1000 genomes] |
| rs7930410 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7931787 | 1.00[EUR][1000 genomes] |
| rs7945458 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1054205 | chr11:57544264-58358509 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
| 2 | nsv1039453 | chr11:57924680-58119650 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv541051 | chr11:57924680-58119650 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:58084200-58102400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
