Variant report

Variant	rs7931787
Chromosome Location	chr11:57996408-57996409
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:122)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:57996369-57996419	SKMC	muscle:	n/a
2	chr11:57996371-57996421	NHBE	bronchial:	n/a
3	chr11:57996369-57996419	MCF10A-Er-Src	breast:	n/a
4	chr11:57996371-57996421	HNPCEpiC	eye:	n/a
5	chr11:57996369-57996419	PANC-1	pancreas:	n/a
6	chr11:57996369-57996419	GM12891	blood:	n/a
7	chr11:57996369-57996419	HNPCEpiC	eye:	n/a
8	chr11:57996369-57996419	A549	lung:	n/a
9	chr11:57996369-57996419	Hepatocyte	liver:	n/a
10	chr11:57996369-57996419	BJ	skin:	n/a
11	chr11:57996369-57996419	SK-N-SH_RA	brain:	n/a
12	chr11:57996369-57996419	Caco-2	colon:	n/a
13	chr11:57996369-57996419	HCF	heart:	n/a
14	chr11:57996371-57996421	PrEC	prostate:	n/a
15	chr11:57996369-57996419	H1-hESC	embryonic stem cell:	embryo
16	chr11:57996371-57996421	CMK	blood:	n/a
17	chr11:57996371-57996421	HepG2	liver:	n/a
18	chr11:57996371-57996421	RPTEC	kidney:	n/a
19	chr11:57996371-57996421	HEEpiC	esophagus:	n/a
20	chr11:57996371-57996421	HRE	kidney:	n/a
21	chr11:57996371-57996421	MCF10A-Er-Src	breast:	n/a
22	chr11:57996369-57996419	HRE	kidney:	n/a
23	chr11:57996371-57996421	AG04449	skin:	fetal
24	chr11:57996369-57996419	Hela-S3	cervix:	n/a
25	chr11:57996371-57996421	GM12892	blood:	n/a
26	chr11:57996371-57996421	SK-N-SH_RA	brain:	n/a
27	chr11:57996371-57996421	GM12878	blood:	n/a
28	chr11:57996371-57996421	AG09309	skin:	n/a
29	chr11:57996369-57996419	GM19239	blood:	n/a
30	chr11:57996371-57996421	Hepatocyte	liver:	n/a
31	chr11:57996371-57996421	U87	brain:	n/a
32	chr11:57996371-57996421	ProgFib	skin:	n/a
33	chr11:57996369-57996419	HCPEpiC	choroid plexus:	n/a
34	chr11:57996371-57996421	HRCEpiC	kidney:	n/a
35	chr11:57996371-57996421	HMEC	breast:	n/a
36	chr11:57996371-57996421	HCF	heart:	n/a
37	chr11:57996371-57996421	AG10803	skin:	n/a
38	chr11:57996371-57996421	LNCaP	prostate:	n/a
39	chr11:57996369-57996419	GM12878	blood:	n/a
40	chr11:57996371-57996421	H1-hESC	embryonic stem cell:	embryo
41	chr11:57996371-57996421	AG09319	gingival:	n/a
42	chr11:57996371-57996421	AoSMC	blood vessel:	n/a
43	chr11:57996371-57996421	HIPEpiC	eye:	n/a
44	chr11:57996369-57996419	CMK	blood:	n/a
45	chr11:57996369-57996419	K562	blood:	n/a
46	chr11:57996371-57996421	GM12891	blood:	n/a
47	chr11:57996369-57996419	U87	brain:	n/a
48	chr11:57996369-57996419	AG04449	skin:	fetal
49	chr11:57996369-57996419	MCF-7	breast:	n/a
50	chr11:57996369-57996419	AG09319	gingival:	n/a

No data

Variant related genes	Relation type
OR10Q1	CpG island

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11820944	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55708183	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55710682	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55718341	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55824169	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55998491	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56302613	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58175937	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58487339	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59866012	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60168609	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs61205173	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7101365	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7109718	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7111538	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113224	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7113367	1.00[EUR][1000 genomes]
rs7113462	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7115601	0.82[EUR][1000 genomes]
rs7117078	1.00[EUR][1000 genomes]
rs7124050	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7129705	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7926604	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7928023	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930410	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7945458	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv832165	chr11:57806024-58009076	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv832166	chr11:57852031-58006189	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1039453	chr11:57924680-58119650	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv541051	chr11:57924680-58119650	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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