Variant report

Variant	rs58487339
Chromosome Location	chr11:58101886-58101887
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11820944	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2510549	0.87[AMR][1000 genomes]
rs2510862	0.87[AMR][1000 genomes]
rs2510863	0.87[AMR][1000 genomes]
rs2515349	0.87[AMR][1000 genomes]
rs2515360	0.87[AMR][1000 genomes]
rs2515361	0.87[AMR][1000 genomes]
rs2515372	0.87[AMR][1000 genomes]
rs55708183	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55710682	1.00[EUR][1000 genomes]
rs55718341	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55824169	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55998491	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56302613	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58175937	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59866012	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60168609	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61205173	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7101365	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7109718	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111538	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7113224	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115601	0.82[EUR][1000 genomes]
rs7117078	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124050	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7126153	1.00[ASN][1000 genomes]
rs7127027	1.00[ASN][1000 genomes]
rs7129705	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7926604	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928023	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7930410	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931787	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7945458	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1039453	chr11:57924680-58119650	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv541051	chr11:57924680-58119650	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58084200-58102400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:58098800-58102200	Weak transcription	NHLF	lung
3	chr11:58099000-58102000	Weak transcription	HSMM	muscle
4	chr11:58101400-58102000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr11:58101400-58102000	Enhancers	HUVEC	blood vessel
6	chr11:58101400-58102400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:58101600-58102400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:58101600-58102400	Enhancers	NH-A	brain
9	chr11:58101600-58103000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:58101600-58103200	Enhancers	NHEK	skin
11	chr11:58101600-58103200	Enhancers	Osteobl	bone
12	chr11:58101800-58103000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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