Variant report

Variant	rs2510863
Chromosome Location	chr11:58266788-58266789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10750899	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10750900	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11820944	0.87[AMR][1000 genomes]
rs11824479	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs11827157	0.84[EUR][1000 genomes]
rs12277283	0.84[EUR][1000 genomes]
rs12292248	0.84[EUR][1000 genomes]
rs1802347	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1944053	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2507759	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[YRI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509917	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509921	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509926	1.00[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509929	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[EUR][1000 genomes]
rs2510549	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2510551	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2510555	0.87[ASN][1000 genomes]
rs2510556	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2510558	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2510862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515348	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515349	1.00[CEU][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515358	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515360	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515361	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515372	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55708183	0.87[AMR][1000 genomes]
rs55718341	0.87[AMR][1000 genomes]
rs55824169	0.87[AMR][1000 genomes]
rs55867213	0.84[EUR][1000 genomes]
rs55952041	0.84[EUR][1000 genomes]
rs55998491	0.87[AMR][1000 genomes]
rs56233432	0.84[EUR][1000 genomes]
rs58175937	0.87[AMR][1000 genomes]
rs58487339	0.87[AMR][1000 genomes]
rs60168609	0.87[AMR][1000 genomes]
rs61205173	0.87[AMR][1000 genomes]
rs6591480	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7101365	0.87[AMR][1000 genomes]
rs7109718	0.87[AMR][1000 genomes]
rs7113224	0.87[AMR][1000 genomes]
rs7113367	0.87[AMR][1000 genomes]
rs7113462	0.87[AMR][1000 genomes]
rs7124050	0.87[AMR][1000 genomes]
rs7358405	0.84[EUR][1000 genomes]
rs7926604	0.87[AMR][1000 genomes]
rs7928565	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930253	0.84[EUR][1000 genomes]
rs7930410	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv976518	chr11:58247628-58271109	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58262600-58274800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:58263400-58267200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr11:58264400-58270600	Weak transcription	GM12878-XiMat	blood
4	chr11:58265000-58267000	Enhancers	Primary T cells from cord blood	blood
5	chr11:58265400-58266800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr11:58265400-58266800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr11:58265400-58266800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr11:58265400-58266800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:58265400-58266800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:58265400-58267000	Enhancers	Primary T cells fromperipheralblood	blood
11	chr11:58265400-58267000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr11:58265400-58267200	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr11:58265600-58266800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr11:58265800-58267000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr11:58266200-58268200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr11:58266200-58270800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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