Variant report

Variant	rs11824479
Chromosome Location	chr11:58194129-58194130
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10750899	1.00[EUR][1000 genomes]
rs10750900	1.00[EUR][1000 genomes]
rs11820944	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11827157	1.00[EUR][1000 genomes]
rs12277283	1.00[EUR][1000 genomes]
rs1802347	1.00[EUR][1000 genomes]
rs1944053	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2507759	1.00[CEU][hapmap];0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs2509917	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs2509921	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2509926	1.00[EUR][1000 genomes]
rs2509929	1.00[EUR][1000 genomes]
rs2510549	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2510551	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs2510556	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs2510558	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2510862	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2510863	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2515348	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2515349	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2515358	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2515360	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2515361	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2515372	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55708183	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55718341	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55824169	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55867213	1.00[EUR][1000 genomes]
rs55952041	1.00[EUR][1000 genomes]
rs55998491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56233432	1.00[EUR][1000 genomes]
rs56302613	0.88[AFR][1000 genomes]
rs58175937	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58487339	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59866012	0.90[AFR][1000 genomes]
rs60168609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61205173	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6591480	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7101365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109718	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7111538	0.88[AFR][1000 genomes]
rs7113224	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7113367	1.00[AMR][1000 genomes]
rs7113462	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7115601	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124050	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7129705	0.90[AFR][1000 genomes]
rs7926604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7928023	0.86[AFR][1000 genomes]
rs7928565	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs7930253	1.00[EUR][1000 genomes]
rs7930410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7931787	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv517849	chr11:58129053-58264181	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv1042491	chr11:58134936-58263639	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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