Variant report

Variant	rs2510558
Chromosome Location	chr11:58360654-58360655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:58360339..58362577-chr11:58379617..58381821,2	K562	blood:
2	chr11:58345474..58348191-chr11:58358091..58360760,3	MCF-7	breast:
3	chr11:58344652..58346208-chr11:58360401..58362263,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000186660	Chromatin interaction
ENSG00000110031	Chromatin interaction
ENSG00000255073	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10750899	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10750900	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824479	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11827157	1.00[EUR][1000 genomes]
rs12277283	1.00[EUR][1000 genomes]
rs12292248	1.00[EUR][1000 genomes]
rs1802347	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1944053	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2507759	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2507762	1.00[AFR][1000 genomes]
rs2509910	1.00[MKK][hapmap]
rs2509917	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509918	1.00[AFR][1000 genomes]
rs2509921	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509926	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509929	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2510549	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2510551	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2510555	0.87[ASN][1000 genomes]
rs2510556	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2510862	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2510863	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515344	1.00[AFR][1000 genomes]
rs2515348	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515349	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515358	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515360	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515361	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515372	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55867213	1.00[EUR][1000 genomes]
rs55952041	1.00[EUR][1000 genomes]
rs56233432	1.00[EUR][1000 genomes]
rs60168609	0.82[EUR][1000 genomes]
rs6591480	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs7101365	0.82[EUR][1000 genomes]
rs7115601	0.82[EUR][1000 genomes]
rs7358405	1.00[EUR][1000 genomes]
rs7928565	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930253	1.00[EUR][1000 genomes]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58347600-58361400	Weak transcription	Gastric	stomach
2	chr11:58347600-58379600	Weak transcription	Pancreas	Pancrea
3	chr11:58347600-58379800	Weak transcription	Lung	lung
4	chr11:58347600-58380200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:58347800-58377200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr11:58347800-58380200	Weak transcription	Aorta	Aorta
7	chr11:58348200-58377400	Weak transcription	Fetal Kidney	kidney
8	chr11:58349200-58363200	Weak transcription	Brain Germinal Matrix	brain
9	chr11:58349200-58377400	Weak transcription	HSMMtube	muscle
10	chr11:58349200-58379600	Weak transcription	Spleen	Spleen
11	chr11:58349200-58380600	Weak transcription	Fetal Brain Male	brain
12	chr11:58349200-58384200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr11:58349200-58384800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:58349400-58367600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:58349600-58364200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr11:58349600-58368200	Weak transcription	Brain Anterior Caudate	brain
17	chr11:58351000-58361400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr11:58351000-58367800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr11:58351200-58378200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr11:58352000-58368400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:58352600-58379600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:58352800-58361800	Strong transcription	Dnd41	blood
23	chr11:58353400-58367600	Weak transcription	Hela-S3	cervix
24	chr11:58353600-58364400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr11:58354200-58364400	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr11:58354600-58377400	Weak transcription	Fetal Brain Female	brain
27	chr11:58354800-58376800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:58355000-58363200	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr11:58355000-58366800	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr11:58355000-58367000	Weak transcription	Primary hematopoietic stem cells	blood
31	chr11:58355000-58377200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr11:58355000-58377200	Weak transcription	NH-A	brain
33	chr11:58355200-58361200	Weak transcription	Brain Hippocampus Middle	brain
34	chr11:58355400-58361600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr11:58355600-58362400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr11:58355600-58368000	Weak transcription	Brain Angular Gyrus	brain
37	chr11:58356000-58361000	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr11:58356800-58361000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr11:58357200-58377200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr11:58357800-58365000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr11:58358200-58360800	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr11:58358600-58360800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr11:58358600-58360800	Strong transcription	HSMM	muscle
44	chr11:58358600-58364400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:58358800-58361800	Strong transcription	Primary B cells from cord blood	blood
46	chr11:58359000-58360800	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr11:58359000-58361600	Enhancers	Liver	Liver
48	chr11:58359000-58361800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr11:58359200-58361200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr11:58359200-58361400	Strong transcription	Adipose Nuclei	Adipose

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