Variant report

Variant	rs2515361
Chromosome Location	chr11:58320200-58320201
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:58318877..58321281-chr11:58325366..58326890,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10750899	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10750900	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824479	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs11827157	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12277283	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12292248	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1802347	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1944053	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2507759	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509917	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509921	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509926	1.00[CEU][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509929	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[EUR][1000 genomes]
rs2510549	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2510551	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2510555	0.87[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2510556	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2510558	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2510862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2510863	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515348	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515349	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515358	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515372	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55867213	1.00[EUR][1000 genomes]
rs55952041	1.00[EUR][1000 genomes]
rs55998491	0.87[AMR][1000 genomes]
rs56233432	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58487339	0.87[AMR][1000 genomes]
rs60168609	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61205173	0.87[AMR][1000 genomes]
rs6591480	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7101365	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7115601	0.82[EUR][1000 genomes]
rs7358405	1.00[EUR][1000 genomes]
rs7926604	0.87[AMR][1000 genomes]
rs7928565	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930253	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7930410	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58292200-58327400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:58300000-58340600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:58300600-58338600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:58306000-58322400	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr11:58308200-58324000	Weak transcription	NH-A	brain
6	chr11:58309000-58336200	Weak transcription	NHEK	skin
7	chr11:58309400-58323400	Weak transcription	HUVEC	blood vessel
8	chr11:58309600-58338800	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr11:58309800-58322600	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr11:58310000-58330000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr11:58310200-58322400	Strong transcription	Primary B cells from peripheral blood	blood
12	chr11:58310200-58322400	Strong transcription	Liver	Liver
13	chr11:58310200-58322600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:58310200-58322800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr11:58310400-58322400	Strong transcription	Adipose Nuclei	Adipose
16	chr11:58310400-58322400	Strong transcription	Duodenum Mucosa	Duodenum
17	chr11:58310400-58322600	Strong transcription	Primary B cells from cord blood	blood
18	chr11:58310400-58322600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr11:58310400-58322600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr11:58310400-58322600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr11:58310400-58322600	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr11:58310400-58322800	Strong transcription	Fetal Thymus	thymus
23	chr11:58310400-58322800	Strong transcription	GM12878-XiMat	blood
24	chr11:58310600-58322400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr11:58310600-58322400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr11:58310600-58322600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr11:58310600-58331000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr11:58311400-58320200	Strong transcription	Colon Smooth Muscle	Colon
29	chr11:58311600-58322400	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr11:58311800-58322400	Strong transcription	Thymus	Thymus
31	chr11:58311800-58322800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
32	chr11:58312000-58323000	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr11:58312200-58322000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr11:58312200-58322000	Strong transcription	Brain Anterior Caudate	brain
35	chr11:58312400-58322400	Strong transcription	Fetal Intestine Large	intestine
36	chr11:58312600-58322200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:58312600-58322200	Strong transcription	Skeletal Muscle Female	skeletal muscle
38	chr11:58312600-58322400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr11:58312600-58322400	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr11:58312600-58322400	Strong transcription	Stomach Smooth Muscle	stomach
41	chr11:58312800-58322800	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr11:58312800-58323200	Strong transcription	Primary T cells from cord blood	blood
43	chr11:58313000-58322600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr11:58313400-58322400	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr11:58313400-58322400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr11:58313800-58322400	Strong transcription	NHDF-Ad	bronchial
47	chr11:58314000-58321600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr11:58314200-58321800	Strong transcription	Ovary	ovary
49	chr11:58315000-58321000	Strong transcription	Fetal Lung	lung
50	chr11:58315200-58321400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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