Variant report

Variant	rs2509921
Chromosome Location	chr11:58379531-58379532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:58372664..58374544-chr11:58379050..58381162,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10750899	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10750900	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824479	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11827157	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12277283	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12292248	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1802347	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1944053	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2507759	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509917	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509926	1.00[CEU][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509929	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2510549	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2510551	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2510555	0.87[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2510556	1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2510558	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2510862	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2510863	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515348	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515349	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515358	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515360	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515361	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515372	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55867213	1.00[EUR][1000 genomes]
rs55952041	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56233432	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60168609	0.82[EUR][1000 genomes]
rs6591480	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7101365	0.82[EUR][1000 genomes]
rs7115601	0.82[EUR][1000 genomes]
rs7358405	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7928565	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930253	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58347600-58379600	Weak transcription	Pancreas	Pancrea
2	chr11:58347600-58379800	Weak transcription	Lung	lung
3	chr11:58347600-58380200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:58347800-58380200	Weak transcription	Aorta	Aorta
5	chr11:58349200-58379600	Weak transcription	Spleen	Spleen
6	chr11:58349200-58380600	Weak transcription	Fetal Brain Male	brain
7	chr11:58349200-58384200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:58349200-58384800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:58352600-58379600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:58360400-58379600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:58360600-58379600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:58360600-58379600	Weak transcription	Fetal Stomach	stomach
13	chr11:58360600-58380200	Weak transcription	Esophagus	oesophagus
14	chr11:58362600-58379600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:58363000-58393200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr11:58363400-58379800	Weak transcription	Brain Germinal Matrix	brain
17	chr11:58366200-58379800	Weak transcription	Fetal Heart	heart
18	chr11:58368600-58380400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr11:58369000-58379600	Weak transcription	Brain Angular Gyrus	brain
20	chr11:58369000-58379600	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr11:58371200-58379600	Weak transcription	Left Ventricle	heart
22	chr11:58372000-58384200	Weak transcription	Gastric	stomach
23	chr11:58372400-58379600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:58372400-58380000	Weak transcription	Small Intestine	intestine
25	chr11:58373200-58380200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr11:58374600-58380200	Weak transcription	Stomach Mucosa	stomach
27	chr11:58375800-58388200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:58376200-58384400	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr11:58376600-58388400	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr11:58376600-58391800	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr11:58376600-58395800	Strong transcription	Fetal Thymus	thymus
32	chr11:58376600-58396200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:58376800-58388200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr11:58376800-58391600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr11:58376800-58393200	Strong transcription	Primary B cells from peripheral blood	blood
36	chr11:58376800-58395200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr11:58376800-58395600	Strong transcription	Dnd41	blood
38	chr11:58377000-58391400	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr11:58377000-58391600	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr11:58377000-58394600	Strong transcription	K562	blood
41	chr11:58377200-58382000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr11:58377200-58382600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr11:58377200-58382800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr11:58377200-58383000	Strong transcription	NHLF	lung
45	chr11:58377200-58383200	Strong transcription	NHDF-Ad	bronchial
46	chr11:58377200-58383400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr11:58377200-58383400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr11:58377200-58383400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr11:58377200-58383600	Strong transcription	NH-A	brain
50	chr11:58377200-58383600	Strong transcription	Osteobl	bone

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