Variant report

Variant	rs7115601
Chromosome Location	chr11:58161312-58161313
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10750899	0.82[EUR][1000 genomes]
rs10750900	0.82[EUR][1000 genomes]
rs11820944	0.82[EUR][1000 genomes]
rs1802347	0.82[EUR][1000 genomes]
rs1944053	0.82[EUR][1000 genomes]
rs2507759	0.82[EUR][1000 genomes]
rs2509917	0.82[EUR][1000 genomes]
rs2509921	0.82[EUR][1000 genomes]
rs2510549	0.82[EUR][1000 genomes]
rs2510556	0.82[EUR][1000 genomes]
rs2510558	0.82[EUR][1000 genomes]
rs2510862	0.82[EUR][1000 genomes]
rs2515348	0.82[EUR][1000 genomes]
rs2515349	0.82[EUR][1000 genomes]
rs2515358	0.82[EUR][1000 genomes]
rs2515360	0.82[EUR][1000 genomes]
rs2515361	0.82[EUR][1000 genomes]
rs2515372	0.82[EUR][1000 genomes]
rs55708183	0.82[EUR][1000 genomes]
rs55710682	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55718341	0.82[EUR][1000 genomes]
rs55824169	0.82[EUR][1000 genomes]
rs55867213	0.82[EUR][1000 genomes]
rs55998491	0.82[EUR][1000 genomes]
rs56302613	0.82[EUR][1000 genomes]
rs58175937	0.82[EUR][1000 genomes]
rs58435696	0.83[AFR][1000 genomes]
rs58487339	0.82[EUR][1000 genomes]
rs59866012	0.82[EUR][1000 genomes]
rs60168609	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61205173	0.82[EUR][1000 genomes]
rs7101365	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111538	0.82[EUR][1000 genomes]
rs7113224	0.82[EUR][1000 genomes]
rs7113367	0.82[EUR][1000 genomes]
rs7113462	0.82[EUR][1000 genomes]
rs7117078	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7124050	0.82[EUR][1000 genomes]
rs7129705	0.82[EUR][1000 genomes]
rs7926604	0.82[EUR][1000 genomes]
rs7928023	0.82[EUR][1000 genomes]
rs7928565	0.82[EUR][1000 genomes]
rs7930410	0.82[EUR][1000 genomes]
rs7931787	0.82[EUR][1000 genomes]
rs7945458	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv517849	chr11:58129053-58264181	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv1042491	chr11:58134936-58263639	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1037213	chr11:58142913-58178810	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58156600-58162800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:58158200-58162800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:58158800-58162400	Enhancers	NHLF	lung
4	chr11:58159000-58162200	Enhancers	Osteobl	bone
5	chr11:58159000-58162400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr11:58159400-58162200	Enhancers	NHDF-Ad	bronchial
7	chr11:58159600-58162200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:58159600-58162400	Enhancers	HMEC	breast
9	chr11:58159800-58162800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:58159800-58163800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:58160000-58162200	Enhancers	Hela-S3	cervix
12	chr11:58160000-58162200	Enhancers	HSMMtube	muscle
13	chr11:58160000-58162400	Enhancers	NHEK	skin
14	chr11:58160200-58161400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:58160200-58161400	Enhancers	NH-A	brain
16	chr11:58160200-58162400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:58160200-58162600	Enhancers	HUVEC	blood vessel
18	chr11:58160200-58163800	Enhancers	HSMM	muscle
19	chr11:58160400-58162200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:58160400-58162200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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