Variant report

Variant	rs2515349
Chromosome Location	chr11:58298490-58298491
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10750899	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10750900	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11820944	0.87[AMR][1000 genomes]
rs11824479	1.00[CEU][hapmap]
rs11827157	1.00[EUR][1000 genomes]
rs12277283	1.00[EUR][1000 genomes]
rs12292248	1.00[EUR][1000 genomes]
rs1802347	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1944053	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2507759	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509917	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509921	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509926	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509929	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2510549	1.00[CEU][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2510551	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2510555	0.87[ASN][1000 genomes]
rs2510556	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2510558	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2510862	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2510863	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515348	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515358	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515361	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515372	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55718341	0.87[AMR][1000 genomes]
rs55824169	0.87[AMR][1000 genomes]
rs55867213	1.00[EUR][1000 genomes]
rs55952041	1.00[EUR][1000 genomes]
rs55998491	0.87[AMR][1000 genomes]
rs56233432	1.00[EUR][1000 genomes]
rs58487339	0.87[AMR][1000 genomes]
rs60168609	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61205173	0.87[AMR][1000 genomes]
rs6591480	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7101365	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7113224	0.87[AMR][1000 genomes]
rs7113462	0.87[AMR][1000 genomes]
rs7115601	0.82[EUR][1000 genomes]
rs7124050	0.87[AMR][1000 genomes]
rs7358405	1.00[EUR][1000 genomes]
rs7926604	0.87[AMR][1000 genomes]
rs7928565	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930253	1.00[EUR][1000 genomes]
rs7930410	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58292000-58299200	Weak transcription	Esophagus	oesophagus
2	chr11:58292000-58299400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:58292000-58314000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:58292000-58317200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:58292000-58317600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr11:58292200-58299200	Weak transcription	NHLF	lung
7	chr11:58292200-58299800	Weak transcription	NH-A	brain
8	chr11:58292200-58307200	Weak transcription	NHDF-Ad	bronchial
9	chr11:58292200-58311400	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:58292200-58312200	Weak transcription	Placenta	Placenta
11	chr11:58292200-58312400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:58292200-58314000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:58292200-58316600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:58292200-58316600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr11:58292200-58317200	Weak transcription	Brain Angular Gyrus	brain
16	chr11:58292200-58317200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:58292200-58317200	Weak transcription	Fetal Kidney	kidney
18	chr11:58292200-58317400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr11:58292200-58327400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:58292600-58313800	Weak transcription	Osteobl	bone
21	chr11:58292600-58315000	Weak transcription	Fetal Lung	lung
22	chr11:58293000-58301800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:58293400-58317000	Weak transcription	Fetal Heart	heart
24	chr11:58293400-58317200	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr11:58293800-58317200	Weak transcription	Brain Germinal Matrix	brain
26	chr11:58294200-58301200	Strong transcription	Adipose Nuclei	Adipose
27	chr11:58294400-58300000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr11:58294400-58301000	Strong transcription	Liver	Liver
29	chr11:58294600-58299800	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr11:58294600-58314000	Weak transcription	Primary hematopoietic stem cells	blood
31	chr11:58294800-58302800	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr11:58295000-58299200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr11:58295200-58299200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr11:58295200-58303400	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr11:58295400-58317400	Weak transcription	Psoas Muscle	Psoas
36	chr11:58295800-58312200	Weak transcription	Brain Anterior Caudate	brain
37	chr11:58295800-58312800	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr11:58295800-58313600	Weak transcription	Brain Substantia Nigra	brain
39	chr11:58295800-58314600	Weak transcription	Right Ventricle	heart
40	chr11:58296000-58299200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr11:58296000-58299400	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr11:58296000-58306000	Weak transcription	GM12878-XiMat	blood
43	chr11:58296000-58306600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr11:58296000-58312800	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr11:58296000-58315800	Weak transcription	HMEC	breast
46	chr11:58296000-58317000	Weak transcription	HSMMtube	muscle
47	chr11:58296000-58317200	Weak transcription	Small Intestine	intestine
48	chr11:58296200-58310200	Weak transcription	HSMM	muscle
49	chr11:58296200-58313800	Weak transcription	Dnd41	blood
50	chr11:58296400-58299200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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