Variant report

Variant	rs7144439
Chromosome Location	chr14:71792989-71792990
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXM1	chr14:71792632-71793041	GM12878	blood:	n/a	n/a
2	BCLAF1	chr14:71792426-71793024	GM12878	blood:	n/a	n/a
3	POLR2A	chr14:71790674-71793045	GM12878	blood:	n/a	n/a
4	RUNX3	chr14:71791332-71793080	GM12878	blood:	n/a	n/a
5	RUNX3	chr14:71792569-71793074	GM12878	blood:	n/a	n/a
6	NFIC	chr14:71792567-71793081	GM12878	blood:	n/a	n/a
7	ZNF384	chr14:71791635-71793095	GM12878	blood:	n/a	n/a
8	MTA3	chr14:71792331-71792997	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:71791240..71793345-chr14:71795264..71797079,2	MCF-7	breast:
2	chr14:71791876..71795993-chr14:71799711..71802625,3	MCF-7	breast:
3	chr14:71786919..71789701-chr14:71792823..71795908,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259146	TF binding region
ENSG00000197555	Chromatin interaction
ENSG00000259146	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10141864	0.87[AFR][1000 genomes]
rs10141975	0.87[AFR][1000 genomes]
rs61586684	0.86[AFR][1000 genomes]
rs7151209	0.86[AFR][1000 genomes]
rs718853	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832827	chr14:71676178-71833519	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv1831401	chr14:71786411-71845264	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71788600-71794600	Weak transcription	Gastric	stomach
2	chr14:71788600-71811200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:71788600-71817000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:71788800-71793400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr14:71789000-71793400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr14:71789000-71793400	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr14:71789000-71800600	Weak transcription	Esophagus	oesophagus
8	chr14:71789200-71796800	Weak transcription	Fetal Intestine Small	intestine
9	chr14:71789200-71800400	Weak transcription	Aorta	Aorta
10	chr14:71789400-71802200	Weak transcription	Fetal Intestine Large	intestine
11	chr14:71789800-71793000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr14:71789800-71794800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr14:71789800-71797000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr14:71789800-71820000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr14:71790000-71795000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr14:71790000-71796000	Enhancers	Primary B cells from peripheral blood	blood
17	chr14:71790200-71794400	Weak transcription	Fetal Lung	lung
18	chr14:71790200-71798000	Weak transcription	Brain Angular Gyrus	brain
19	chr14:71790400-71794400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr14:71790800-71793000	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr14:71791000-71793000	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr14:71791000-71793000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr14:71791000-71793000	Enhancers	Fetal Heart	heart
24	chr14:71791200-71793000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr14:71791400-71793000	Enhancers	H1 Cell Line	embryonic stem cell
26	chr14:71791400-71793000	Enhancers	H9 Cell Line	embryonic stem cell
27	chr14:71791400-71793000	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr14:71791400-71793200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr14:71791400-71793200	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr14:71791400-71793400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr14:71791400-71793400	Flanking Active TSS	GM12878-XiMat	blood
32	chr14:71791600-71793200	Enhancers	Primary T cells fromperipheralblood	blood
33	chr14:71791800-71793000	Enhancers	Dnd41	blood
34	chr14:71791800-71794400	Weak transcription	NH-A	brain
35	chr14:71791800-71794600	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr14:71791800-71794600	Weak transcription	HSMM	muscle
37	chr14:71791800-71795600	Enhancers	Primary T cells from cord blood	blood
38	chr14:71791800-71806400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr14:71792000-71793000	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr14:71792000-71793200	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr14:71792000-71794200	Weak transcription	HepG2	liver
42	chr14:71792000-71794400	Weak transcription	HMEC	breast
43	chr14:71792000-71796200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr14:71792000-71801800	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr14:71792200-71793600	Enhancers	Primary B cells from cord blood	blood
46	chr14:71792200-71794400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr14:71792200-71795400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr14:71792200-71800000	Weak transcription	Brain Hippocampus Middle	brain
49	chr14:71792200-71819400	Weak transcription	NHEK	skin
50	chr14:71792400-71793200	Enhancers	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links