Variant report

Variant	rs10141975
Chromosome Location	chr14:71756026-71756027
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10129431	0.80[AFR][1000 genomes]
rs10141864	1.00[AFR][1000 genomes]
rs61419469	0.85[AFR][1000 genomes]
rs61586684	0.89[AFR][1000 genomes]
rs7144439	0.87[AFR][1000 genomes]
rs7151209	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs7159161	0.81[AFR][1000 genomes]
rs718853	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs73302913	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041980	chr14:71196358-71767339	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv542125	chr14:71196358-71767339	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1044090	chr14:71496198-71780026	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv832827	chr14:71676178-71833519	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71755800-71756400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr14:71755800-71756400	Enhancers	GM12878-XiMat	blood
3	chr14:71755800-71756600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:71755800-71756600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:71755800-71757000	Enhancers	Primary B cells from peripheral blood	blood
6	chr14:71755800-71757000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr14:71755800-71757200	Weak transcription	NHDF-Ad	bronchial
8	chr14:71755800-71758200	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr14:71755800-71758600	Enhancers	Placenta	Placenta
10	chr14:71756000-71756400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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